Function _parseSet has a Cognitive Complexity of 63 (exceeds 5 allowed). Consider refactoring.

Open

  _parseSet(varData) {
    const complex = (this._complex = new Complex())
    const data = varData
    const currentLabel = data.curr
    const { atoms, labels } = data

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Complex has 65 functions (exceeds 20 allowed). Consider refactoring.

Open

class Complex {
  constructor() {
    this._chains = []
    this._components = []
    this._helices = []

File IsoSurface.js has 550 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import IsoSurfaceMarchCube from './IsoSurfaceMarchCube'
import utils from '../../utils'
import { BufferAttribute, BufferGeometry, Matrix3, Vector3 } from 'three'

const edgeTable = [

Function _updateVertices has a Cognitive Complexity of 54 (exceeds 5 allowed). Consider refactoring.

Open

  _updateVertices() {
    // Algorithm:
    // 1. Get plane parameters
    // 2. Compute culling flags for all vertices
    // 3. If intersection occurs => compute from 3 to 6 intersection points

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Function _buildBetaSheets has 209 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _buildBetaSheets() {
    // find bridges
    // check each chain against each other chain, and against itself
    const bridges = []
    for (let a = 0; a < this._complex._chains.length; ++a) {

Function _init has 207 lines of code (exceeds 25 allowed). Consider refactoring.

Open

Menu.prototype._init = function () {
  const self = this
  let selectorHide = null
  let selectorShow = null
  let newPanelId = null

Function _initSelectionPanel has 187 lines of code (exceeds 25 allowed). Consider refactoring.

Open

Menu.prototype._initSelectionPanel = function () {
  const self = this
  const selectionPanel = $(
    `${self._menuId} [data-panel-type=miew-menu-panel-selection]`
  )

File selectors.test.js has 471 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import chai, { expect } from 'chai'
import dirtyChai from 'dirty-chai'
import proxyquire from 'proxyquire'
import selectors from './selectors'
import ResidueType from './ResidueType'

Function parse has 182 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    parse: function parse(input) {
      var self = this,
        stack = [0],
        tstack = [],
        vstack = [null],

Function parse has 182 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    parse: function parse(input) {
      var self = this,
        stack = [0],
        tstack = [],
        vstack = [null],

File SecondaryStructureMap.js has 462 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import HBondInfo from './HBondInfo'
import ResidueType from './ResidueType'

const BridgeType = Object.freeze({
  NO_BRIDGE: 0,

Function _selectComponents has a Cognitive Complexity of 46 (exceeds 5 allowed). Consider refactoring.

Open

  _selectComponents(text) {
    const parser = new DOMParser()
    const doc = parser.parseFromString(text, 'application/xml')
    const traversedData = this._traverseData(doc)
    let rawData

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Function CLIUtils has 176 lines of code (exceeds 25 allowed). Consider refactoring.

Open

var CLIUtils = function () {
  function CLIUtils() {
    _classCallCheck(this, CLIUtils);
  }
  _createClass(CLIUtils, [{

Function CLIUtils has 176 lines of code (exceeds 25 allowed). Consider refactoring.

Open

var CLIUtils = function () {
  function CLIUtils() {
    _classCallCheck(this, CLIUtils);
  }
  _createClass(CLIUtils, [{

File utils.js has 447 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import logger from './logger'
import {
  assign,
  isPlainObject,
  forIn,

File utils.js has 447 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import logger from './utils/logger'
import {
  assign,
  isPlainObject,
  forIn,

Function anonymous has 168 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      performAction: function anonymous(yy, yy_, $avoiding_name_collisions, YY_START) {
        switch ($avoiding_name_collisions) {
          case 0
          :
            break;

Function anonymous has 168 lines of code (exceeds 25 allowed). Consider refactoring.

Open

      performAction: function anonymous(yy, yy_, $avoiding_name_collisions, YY_START) {
        switch ($avoiding_name_collisions) {
          case 0
          :
            break;

Function _parseSet has 165 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  _parseSet(varData) {
    const complex = (this._complex = new Complex())
    const data = varData
    const currentLabel = data.curr
    const { atoms, labels } = data

File options.test.js has 441 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import { isArray, isEqual } from 'lodash'
import chai, { expect } from 'chai'
import dirtyChai from 'dirty-chai'
import options from './options'