epam/miew

File selectors.test.js has 471 lines of code (exceeds 250 allowed). Consider refactoring.

Open

import chai, { expect } from 'chai'
import dirtyChai from 'dirty-chai'
import proxyquire from 'proxyquire'
import selectors from './selectors'
import ResidueType from './ResidueType'

Similar blocks of code found in 2 locations. Consider refactoring.

Open

  describe('AndOperator', () => {
    describe('#includesAtom(atom)', () => {
      it('gives true for true and true selectors results', () => {
        expect(
          selectors.and(selectors.all(), selectors.all()).includesAtom(atom)

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Similar blocks of code found in 2 locations. Consider refactoring.

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  describe('OrOperator', () => {
    describe('#includesAtom(atom)', () => {
      it('gives true for true and true selector results', () => {
        expect(
          selectors.or(selectors.all(), selectors.all()).includesAtom(atom)

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Similar blocks of code found in 5 locations. Consider refactoring.

Open

  describe('ResidueSelector', () => {
    describe('#includesAtom(atom)', () => {
      it('includes atom with same residue name in same case', () => {
        expect(selectors.residue('ALA').includesAtom(atom)).to.equal(true)
      })

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Similar blocks of code found in 5 locations. Consider refactoring.

Open

  describe('ChainSelector', () => {
    describe('#includesAtom(atom)', () => {
      it('includes atom with same chain name in same case', () => {
        expect(selectors.chain('B').includesAtom(atom)).to.equal(true)
      })

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Similar blocks of code found in 5 locations. Consider refactoring.

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  describe('NameSelector', () => {
    describe('#includesAtom(atom)', () => {
      it('includes atom with such name in same case', () => {
        expect(selectors.name('CA').includesAtom(atom)).to.equal(true)
      })

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Similar blocks of code found in 5 locations. Consider refactoring.

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  describe('ICodeSelector', () => {
    describe('#includesAtom(atom)', () => {
      it('includes atom with same residue ICode in same case', () => {
        expect(selectors.icode('A').includesAtom(atom)).to.equal(true)
      })

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Similar blocks of code found in 5 locations. Consider refactoring.

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  describe('ElemSelector', () => {
    describe('#includesAtom(atom)', () => {
      it('includes atom with same element name in same case', () => {
        expect(selectors.elem('N').includesAtom(atom)).to.equal(true)
      })

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Similar blocks of code found in 2 locations. Consider refactoring.

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  describe('PolarHSelector', () => {
    describe('#includesAtom(atom)', () => {
      const flags = {
        HYDROGEN: 0x0008,
        NONPOLARH: 0x1008

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Similar blocks of code found in 2 locations. Consider refactoring.

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  describe('NonPolarHSelector', () => {
    describe('#includesAtom(atom)', () => {
      const flags = {
        HYDROGEN: 0x0008,
        NONPOLARH: 0x1008

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Similar blocks of code found in 10 locations. Consider refactoring.

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  describe('Acidic', () => {
    describe('#includesAtom(atom)', () => {
      it('includes acidic atom', () => {
        atom.residue._type.flags = ResidueType.Flags.ACIDIC
        expect(selectors.acidic().includesAtom(atom)).to.equal(true)

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Similar blocks of code found in 10 locations. Consider refactoring.

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  describe('Purine', () => {
    describe('#includesAtom(atom)', () => {
      it('includes purine atom', () => {
        atom.residue._type.flags = ResidueType.Flags.PURINE
        expect(selectors.purine().includesAtom(atom)).to.equal(true)

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Similar blocks of code found in 10 locations. Consider refactoring.

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  describe('Pyrimidine', () => {
    describe('#includesAtom(atom)', () => {
      it('includes pyrimidine atom', () => {
        atom.residue._type.flags = ResidueType.Flags.PYRIMIDINE
        expect(selectors.pyrimidine().includesAtom(atom)).to.equal(true)

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Similar blocks of code found in 10 locations. Consider refactoring.

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  describe('Water', () => {
    describe('#includesAtom(atom)', () => {
      it('includes water atom', () => {
        atom.residue._type.flags = ResidueType.Flags.WATER
        expect(selectors.water().includesAtom(atom)).to.equal(true)

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Similar blocks of code found in 10 locations. Consider refactoring.

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  describe('Protein', () => {
    describe('#includesAtom(atom)', () => {
      it('includes protein atom', () => {
        atom.residue._type.flags = ResidueType.Flags.PROTEIN
        expect(selectors.protein().includesAtom(atom)).to.equal(true)

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Similar blocks of code found in 10 locations. Consider refactoring.

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  describe('Polar', () => {
    describe('#includesAtom(atom)', () => {
      it('includes polar atom', () => {
        atom.residue._type.flags = ResidueType.Flags.POLAR
        expect(selectors.polar().includesAtom(atom)).to.equal(true)

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Similar blocks of code found in 10 locations. Consider refactoring.

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  describe('Basic', () => {
    describe('#includesAtom(atom)', () => {
      it('includes basic atom', () => {
        atom.residue._type.flags = ResidueType.Flags.BASIC
        expect(selectors.basic().includesAtom(atom)).to.equal(true)

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Similar blocks of code found in 10 locations. Consider refactoring.

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  describe('NonPolar', () => {
    describe('#includesAtom(atom)', () => {
      it('includes nonPolar atom', () => {
        atom.residue._type.flags = ResidueType.Flags.NONPOLAR
        expect(selectors.nonpolar().includesAtom(atom)).to.equal(true)

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Similar blocks of code found in 10 locations. Consider refactoring.

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  describe('Aromatic', () => {
    describe('#includesAtom(atom)', () => {
      it('includes aromatic atom', () => {
        atom.residue._type.flags = ResidueType.Flags.AROMATIC
        expect(selectors.aromatic().includesAtom(atom)).to.equal(true)

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Similar blocks of code found in 10 locations. Consider refactoring.

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  describe('Nucleic', () => {
    describe('#includesAtom(atom)', () => {
      it('includes nucleic atom', () => {
        atom.residue._type.flags = ResidueType.Flags.NUCLEIC
        expect(selectors.nucleic().includesAtom(atom)).to.equal(true)

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Similar blocks of code found in 3 locations. Consider refactoring.

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  describe('ResIdxSelector', () => {
    describe('#includesAtom(atom)', () => {
      it('includes atom wich residue index is inside range', () => {
        expect(selectors.residx(rFrom1To14).includesAtom(atom)).to.equal(true)
      })

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Similar blocks of code found in 3 locations. Consider refactoring.

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  describe('SequenceSelector', () => {
    describe('#includesAtom(atom)', () => {
      it('includes atom which sequence number is inside range', () => {
        expect(selectors.sequence(rFrom1To14).includesAtom(atom)).to.equal(true)
      })

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Similar blocks of code found in 3 locations. Consider refactoring.

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  describe('SerialSelector', () => {
    describe('#includesAtom(atom)', () => {
      it('includes atom which serial is inside range', () => {
        expect(selectors.serial(rFrom1To14).includesAtom(atom)).to.equal(true)
      })

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Identical blocks of code found in 2 locations. Consider refactoring.

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    before(() => {
      selectors.Context.all = selectors.all()
      selectors.Context.noSelector = undefined
      selectors.Context.none = selectors.none()
    })

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Identical blocks of code found in 2 locations. Consider refactoring.

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    before(() => {
      selectors.Context.all = selectors.all()
      selectors.Context.noSelector = undefined
      selectors.Context.none = selectors.none()
    })

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Similar blocks of code found in 2 locations. Consider refactoring.

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      it('excludes other', () => {
        atom.het = false
        expect(selectors.hetatm().includesAtom(atom)).to.equal(false)
      })

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Similar blocks of code found in 2 locations. Consider refactoring.

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      it('includes hetatoms', () => {
        atom.het = true
        expect(selectors.hetatm().includesAtom(atom)).to.equal(true)
      })

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Similar blocks of code found in 2 locations. Consider refactoring.

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      it('inverts true to false', () => {
        expect(selectors.not(selectors.all()).includesAtom(atom)).to.equal(
          false
        )
      })

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Similar blocks of code found in 2 locations. Consider refactoring.

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      it('inverts false to true', () => {
        expect(selectors.not(selectors.none()).includesAtom(atom)).to.equal(
          true
        )
      })

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Similar blocks of code found in 2 locations. Consider refactoring.

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    it('returns object with correct selector in selector field if input string is correct selection string', () => {
      expect(
        modifiedSelector.default.parse('correctSelString').selector
      ).to.deep.equal(correctSelector)
    })

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Similar blocks of code found in 2 locations. Consider refactoring.

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    it('returns object with correct errorMessage if input string is incorrect selection string', () => {
      expect(
        modifiedSelector.default.parse('incorrectSelString').error
      ).to.deep.equal(errorMessage)
    })

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Similar blocks of code found in 2 locations. Consider refactoring.

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    it('returns selector which corresponds to sent key', () => {
      expect(selectors.GetSelector('all')).to.deep.equal(selectors.all())
    })

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Similar blocks of code found in 2 locations. Consider refactoring.

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    it('returns none selector if key corresponds to undefined or empty value', () => {
      expect(selectors.GetSelector('noSelector')).to.deep.equal(
        selectors.none()
      )
    })

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Similar blocks of code found in 3 locations. Consider refactoring.

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    it('returns function for creating selector which corresponds to sent key', () => {
      expect(selectors.keyword('all')).to.deep.equal(selectors.all)
    })

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Similar blocks of code found in 3 locations. Consider refactoring.

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    it('returns function for creating None selector if key corresponds to undefined or empty value', () => {
      expect(selectors.keyword('strangeKey')).to.deep.equal(selectors.none)
    })

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Similar blocks of code found in 3 locations. Consider refactoring.

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    it('returns function for creating selector which corresponds to sent key in different case', () => {
      expect(selectors.keyword('aLl')).to.deep.equal(selectors.all)
    })

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