12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
I, [2024-04-08T16:37:25.486651 #1] INFO -- : Skipping file ./src/torchio/transforms/intensity_transform.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 12
def get_images_dict(self, subject: Subject) -> Dict[str, Image]:
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.497794 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/label/keep_largest_component.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 21
def apply_transform(self, subject: Subject) -> Subject:
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.502889 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/label/one_hot.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 16
def __init__(self, num_classes: int = -1, **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.509225 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/label/contour.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 19
f' but it is {image.num_channels}'
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.520245 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/label/remove_labels.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 61
labels: Sequence[int],
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.529134 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/label/remap_labels.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 139
remapping: Dict[int, int],
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.536510 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/label/label_transform.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 12
def get_images(self, subject: Subject) -> List[LabelMap]:
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.543816 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/label/sequential_labels.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 45
def __init__(self, masking_method: TypeMaskingMethod = None, **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.560170 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/intensity/histogram_standardization.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 57
landmarks: TypeLandmarks,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.561015 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/intensity/mask.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 52
masking_method: TypeMaskingMethod,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.579451 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/intensity/clamp.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 42
out_min: Optional[float] = None,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.594567 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/intensity/normalization_transform.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 39
def __init__(self, masking_method: TypeMaskingMethod = None, **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.606329 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/intensity/rescale.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 48
out_min_max: TypeDoubleFloat = (0, 1),
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.607611 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/intensity/z_normalization.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 20
def __init__(self, masking_method: TypeMaskingMethod = None, **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.618056 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/spatial/pad.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 61
padding: TypeBounds,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.618811 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/spatial/crop.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 34
def __init__(self, cropping: TypeBounds, **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.630195 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/spatial/resample.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 83
target: Union[TypeSpacing, str, Path, Image, None] = 1,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.630248 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/spatial/copy_affine.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 65
def __init__(self, target: str, **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.641950 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/spatial/bounds_transform.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 15
def __init__(self, bounds_parameters: TypeBounds, **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.642068 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/spatial/crop_or_pad.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 76
target_shape: Union[int, TypeTripletInt, None] = None,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.660110 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/spatial/resize.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 34
target_shape: TypeSpatialShape,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.691388 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/spatial/to_canonical.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 31
def apply_transform(self, subject: Subject) -> Subject:
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.695170 #1] INFO -- : Skipping file ./src/torchio/transforms/preprocessing/spatial/ensure_shape_multiple.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 119
target_multiple: Union[int, TypeTripletInt],
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.708056 #1] INFO -- : Skipping file ./src/torchio/transforms/lambda_transform.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 35
function: TypeCallable,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.721730 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/random_transform.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 29
degrees: TypeRangeFloat,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.738631 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/intensity/random_ghosting.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 56
num_ghosts: Union[int, Tuple[int, int]] = (4, 10),
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.748779 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/intensity/random_swap.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 43
patch_size: TypeTuple = 15,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.752548 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/intensity/random_gamma.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 67
def __init__(self, log_gamma: TypeRangeFloat = (-0.3, 0.3), **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.766565 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/intensity/random_bias_field.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 42
coefficients: Union[float, Tuple[float, float]] = 0.5,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.768902 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/intensity/random_motion.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 55
degrees: Union[float, Tuple[float, float]] = 10,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.783399 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/intensity/random_noise.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 38
mean: Union[float, Tuple[float, float]] = 0,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.795643 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/intensity/random_labels_to_image.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 132
label_key: Optional[str] = None,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.801965 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/intensity/random_blur.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 37
def __init__(self, std: Union[float, Tuple[float, float]] = (0, 2), **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.813948 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/intensity/random_spike.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 47
num_spikes: Union[int, Tuple[int, int]] = 1,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.820504 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/composition.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 29
def __init__(self, transforms: Sequence[Transform], **kwargs):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.829619 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/spatial/random_anisotropy.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 51
axes: Union[int, Tuple[int, ...]] = (0, 1, 2),
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.841352 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/spatial/random_affine.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 114
scales: TypeOneToSixFloat = 0.1,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.843644 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/spatial/random_flip.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 43
axes: Union[int, Tuple[int, ...]] = 0,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.860505 #1] INFO -- : Skipping file ./src/torchio/transforms/augmentation/spatial/random_elastic_deformation.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 125
num_control_points: Union[int, Tuple[int, int, int]] = 7,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.876071 #1] INFO -- : Skipping file ./src/torchio/transforms/interpolation.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 19
NEAREST: str = 'sitkNearestNeighbor'
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.891452 #1] INFO -- : Skipping file ./src/torchio/transforms/spatial_transform.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 11
def get_images(self, subject: Subject) -> List[Image]:
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.892194 #1] INFO -- : Skipping file ./src/torchio/transforms/data_parser.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 33
data: TypeTransformInput,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.906700 #1] INFO -- : Skipping file ./src/torchio/transforms/fourier.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 7
def fourier_transform(tensor: torch.Tensor) -> torch.Tensor:
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.936202 #1] INFO -- : Skipping file ./src/torchio/transforms/transform.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 97
p: float = 1,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.944579 #1] INFO -- : Skipping file ./src/torchio/datasets/episurg.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 48
root: TypePath,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.953703 #1] INFO -- : Skipping file ./src/torchio/datasets/medmnist.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 29
raise ValueError(f'The split must be one of {self.SPLITS}')
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.960835 #1] INFO -- : Skipping file ./src/torchio/datasets/mni/icbm.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 37
def __init__(self, load_4d_tissues: bool = True):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.972583 #1] INFO -- : Skipping file ./src/torchio/datasets/mni/colin.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 64
raise ValueError(f'Version must be 1998 or 2008, not "{version}"')
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.973721 #1] INFO -- : Skipping file ./src/torchio/datasets/mni/pediatric.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 23
return f'{integer:02d}.{decimal}'
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:25.984355 #1] INFO -- : Skipping file ./src/torchio/datasets/mni/sheep.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 14
self.filename = f'{self.name}.zip'
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.009350 #1] INFO -- : Skipping file ./src/torchio/datasets/ixi.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 76
root: TypePath,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.010057 #1] INFO -- : Skipping file ./src/torchio/datasets/bite.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 21
root: TypePath,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.023685 #1] INFO -- : Skipping file ./src/torchio/datasets/rsna_miccai.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 61
root_dir: TypePath,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.038253 #1] INFO -- : Skipping file ./src/torchio/datasets/itk_snap/itk_snap.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 22
self.url_dir = urllib.parse.urljoin(self.url_base, f'{code}/')
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.056206 #1] INFO -- : Skipping file ./src/torchio/datasets/rsna_spine_fracture.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 35
root_dir: TypePath,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.084117 #1] INFO -- : Skipping file ./src/torchio/datasets/fpg.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 20
def __init__(self, load_all: bool = False):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.105161 #1] INFO -- : Skipping file ./src/torchio/visualization.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 19
raise ImportError('Install matplotlib for plotting support') from e
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.122957 #1] INFO -- : Skipping file ./src/torchio/external/due.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 62
f'Failed to import duecredit due to {e}',
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.137579 #1] INFO -- : Skipping file ./src/torchio/cli/print_info.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 12
input_path: Path = typer.Argument( # noqa: B008
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.160541 #1] INFO -- : Skipping file ./src/torchio/cli/apply_transform.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 14
input_path: Path = typer.Argument( # noqa: B008
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.178767 #1] INFO -- : Skipping file ./src/torchio/data/subject.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 54
def __init__(self, *args, **kwargs: Dict[str, Any]):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.180456 #1] INFO -- : Skipping file ./src/torchio/utils.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 32
value: Any,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.196102 #1] INFO -- : Skipping file ./src/torchio/data/image.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 133
path: Union[TypePath, Sequence[TypePath], None] = None,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.201199 #1] INFO -- : Skipping file ./src/torchio/data/queue.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 188
subjects_dataset: SubjectsDataset,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.221553 #1] INFO -- : Skipping file ./src/torchio/data/sampler/sampler.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 27
def __init__(self, patch_size: TypeSpatialShape):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.223911 #1] INFO -- : Skipping file ./src/torchio/data/sampler/grid.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 62
subject: Subject,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.241221 #1] INFO -- : Skipping file ./src/torchio/data/sampler/label.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 64
patch_size: TypeSpatialShape,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.265656 #1] INFO -- : Skipping file ./src/torchio/data/sampler/weighted.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 54
patch_size: TypeSpatialShape,
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.270408 #1] INFO -- : Skipping file ./src/torchio/data/sampler/uniform.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 17
def get_probability_map(self, subject: Subject) -> torch.Tensor:
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.298986 #1] INFO -- : Skipping file ./src/torchio/data/dataset.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 69
subjects: Sequence[Subject],
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.301160 #1] INFO -- : Skipping file ./src/torchio/data/inference/aggregator.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 35
def __init__(self, sampler: GridSampler, overlap_mode: str = 'crop'):
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.315495 #1] INFO -- : Skipping file ./src/torchio/data/io.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 33
def read_image(path: TypePath) -> TypeDataAffine:
^
SyntaxError: invalid syntax
I, [2024-04-08T16:37:26.316175 #1] INFO -- : Skipping file ./src/torchio/download.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
print(json.dumps(to_json(ast.parse(source))))
File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
return compile(source, filename, mode, PyCF_ONLY_AST)
File "<unknown>", line 54
url: str,
^
SyntaxError: invalid syntax
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pre-commit-ci[bot] authored 43a7474a