Function highlightText has 48 lines of code (exceeds 25 allowed). Consider refactoring.

Open

jQuery.fn.highlightText = function(text, className) {
  function highlight(node, addItems) {
    if (node.nodeType === 3) {
      var val = node.nodeValue;
      var pos = val.toLowerCase().indexOf(text);

Function make_id_mapping_file has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

    def make_id_mapping_file(
        self,
        map_file: str,
        sep: str = "\t",
        pharmgkb_id_col: str = "PharmGKB Accession Id",

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Function gpi_to_gene_node_data has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

    def gpi_to_gene_node_data(self, rec: dict) -> list:
        """Return node that can be passed to write_node_edge_item().

        Uses a parsed gpi entry.
        :param rec: record from gpi iterator

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Function parse_experiment_info has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

Open

    def parse_experiment_info(self, xmldoc: minidom.Document) -> Dict[int, str]:
        """Extract info about experiment from miXML doc.

        :param self: IntAct instance
        :param xmldoc: a minidom object containing a miXML doc

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Function addCombinator has 47 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function addCombinator( matcher, combinator, base ) {
    var dir = combinator.dir,
        skip = combinator.next,
        key = skip || dir,
        checkNonElements = base && key === "parentNode",

Function tokenize has 46 lines of code (exceeds 25 allowed). Consider refactoring.

Open

tokenize = Sizzle.tokenize = function( selector, parseOnly ) {
    var matched, match, tokens, type,
        soFar, groups, preFilters,
        cached = tokenCache[ selector + " " ];

Function val has 45 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    val: function( value ) {
        var hooks, ret, valueIsFunction,
            elem = this[ 0 ];

        if ( !arguments.length ) {

Function data has 44 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    data: function( key, value ) {
        var i, name, data,
            elem = this[ 0 ],
            attrs = elem && elem.attributes;

Function leverageNative has 44 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function leverageNative( el, type, expectSync ) {

    // Missing expectSync indicates a trigger call, which must force setup through jQuery.event.add
    if ( !expectSync ) {
        if ( dataPriv.get( el, type ) === undefined ) {

Function download_from_yaml has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.

Open

def download_from_yaml(
    yaml_file: str, output_dir: str, ignore_cache: bool = False
) -> None:
    """
    Download files specified in an input yaml.

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Function interaction_to_edge has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.

Open

    def interaction_to_edge(
        self, interaction: minidom.Element, nodes_dict: dict, exp_dict: dict
    ) -> list:
        """Parse an interaction to an edge."""
        edges: List[list] = []

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Function extend has 43 lines of code (exceeds 25 allowed). Consider refactoring.

Open

jQuery.extend = jQuery.fn.extend = function() {
    var options, name, src, copy, copyIsArray, clone,
        target = arguments[ 0 ] || {},
        i = 1,
        length = arguments.length,

Consider simplifying this complex logical expression.

Open

if (!jQuery.browser) {
  jQuery.uaMatch = function(ua) {
    ua = ua.toLowerCase();

    var match = /(chrome)[ \/]([\w.]+)/.exec(ua) ||

Function access has 41 lines of code (exceeds 25 allowed). Consider refactoring.

Open

var access = function( elems, fn, key, value, chainable, emptyGet, raw ) {
    var i = 0,
        len = elems.length,
        bulk = key == null;

Function adjustCSS has 41 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function adjustCSS( elem, prop, valueParts, tween ) {
    var adjusted, scale,
        maxIterations = 20,
        currentValue = tween ?
            function() {

Function dispatch has 41 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    dispatch: function( nativeEvent ) {

        var i, j, ret, matched, handleObj, handlerQueue,
            args = new Array( arguments.length ),

Function stop has 41 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    stop: function( type, clearQueue, gotoEnd ) {
        var stopQueue = function( hooks ) {
            var stop = hooks.stop;
            delete hooks.stop;
            stop( gotoEnd );

Function style has 41 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    style: function( elem, name, value, extra ) {

        // Don't set styles on text and comment nodes
        if ( !elem || elem.nodeType === 3 || elem.nodeType === 8 || !elem.style ) {
            return;

Function setOffset has 40 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    setOffset: function( elem, options, i ) {
        var curPosition, curLeft, curCSSTop, curTop, curOffset, curCSSLeft, calculatePosition,
            position = jQuery.css( elem, "position" ),
            curElem = jQuery( elem ),
            props = {};

Function toggleClass has 40 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    toggleClass: function( value, stateVal ) {
        var type = typeof value,
            isValidValue = type === "string" || Array.isArray( value );

        if ( typeof stateVal === "boolean" && isValidValue ) {