Function on has 40 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function on( elem, types, selector, data, fn, one ) {
    var origFn, type;

    // Types can be a map of types/handlers
    if ( typeof types === "object" ) {

Function initOnKeyListeners has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

Open

  initOnKeyListeners: function() {
    $(document).keydown(function(event) {
      var activeElementType = document.activeElement.tagName;
      // don't navigate when in search box or textarea
      if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT'

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Function highlight has 38 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  function highlight(node, addItems) {
    if (node.nodeType === 3) {
      var val = node.nodeValue;
      var pos = val.toLowerCase().indexOf(text);
      if (pos >= 0 &&

Function ajaxHandleResponses has 37 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function ajaxHandleResponses( s, jqXHR, responses ) {

    var ct, type, finalDataType, firstDataType,
        contents = s.contents,
        dataTypes = s.dataTypes;

Function mightThrow has 36 lines of code (exceeds 25 allowed). Consider refactoring.

Open

                                mightThrow = function() {
                                    var returned, then;

                                    // Support: Promises/A+ section 2.3.3.3.3
                                    // https://promisesaplus.com/#point-59

Function boxModelAdjustment has 36 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function boxModelAdjustment( elem, dimension, box, isBorderBox, styles, computedVal ) {
    var i = dimension === "width" ? 1 : 0,
        extra = 0,
        delta = 0;

Function getWidthOrHeight has 35 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function getWidthOrHeight( elem, dimension, extra ) {

    // Start with computed style
    var styles = getStyles( elem ),

Function handlers has 34 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    handlers: function( event, handlers ) {
        var i, handleObj, sel, matchedHandlers, matchedSelectors,
            handlerQueue = [],
            delegateCount = handlers.delegateCount,
            cur = event.target;

Consider simplifying this complex logical expression.

Open

    if ( ( !support.boxSizingReliable() && isBorderBox ||

        // Support: IE 10 - 11+, Edge 15 - 18+
        // IE/Edge misreport `getComputedStyle` of table rows with width/height
        // set in CSS while `offset*` properties report correct values.

Function showHide has 33 lines of code (exceeds 25 allowed). Consider refactoring.

Open

function showHide( elements, show ) {
    var display, elem,
        values = [],
        index = 0,
        length = elements.length;

Function handler has 32 lines of code (exceeds 25 allowed). Consider refactoring.

Open

        handler: function( event ) {
            var notAsync, result,
                saved = dataPriv.get( this, type );

            if ( ( event.isTrigger & 1 ) && this[ type ] ) {

Function load has 31 lines of code (exceeds 25 allowed). Consider refactoring.

Open

jQuery.fn.load = function( url, params, callback ) {
    var selector, type, response,
        self = this,
        off = url.indexOf( " " );

Function speed has 30 lines of code (exceeds 25 allowed). Consider refactoring.

Open

jQuery.speed = function( speed, easing, fn ) {
    var opt = speed && typeof speed === "object" ? jQuery.extend( {}, speed ) : {
        complete: fn || !fn && easing ||
            isFunction( speed ) && speed,
        duration: speed,

Function set has 30 lines of code (exceeds 25 allowed). Consider refactoring.

Open

        set: function( elem, value, extra ) {
            var matches,
                styles = getStyles( elem ),

                // Only read styles.position if the test has a chance to fail

Function removeClass has 30 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    removeClass: function( value ) {
        var classes, elem, cur, curValue, clazz, j, finalValue,
            i = 0;

        if ( isFunction( value ) ) {

Function attr has 29 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    attr: function( elem, name, value ) {
        var ret, hooks,
            nType = elem.nodeType;

        // Don't get/set attributes on text, comment and attribute nodes

Function finish has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    finish: function( type ) {
        if ( type !== false ) {
            type = type || "fx";
        }
        return this.each( function() {

Function off has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    off: function( types, selector, fn ) {
        var handleObj, type;
        if ( types && types.preventDefault && types.handleObj ) {

            // ( event )  dispatched jQuery.Event

Function parseHTML has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

jQuery.parseHTML = function( data, context, keepScripts ) {
    if ( typeof data !== "string" ) {
        return [];
    }
    if ( typeof context === "boolean" ) {

Function load_mapping has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.

Open

    def load_mapping(
        self, input_dir: str, output_dir: str, species_id: Optional[List] = None
    ) -> None:
        """Load Ensembl Gene to Protein mapping from NCBI gene2ensembl (gene2ensembl.gz).

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