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Showing 27 of 39 total issues

Function gen_cls_dsmd_file_from_datafolder has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
Open

def gen_cls_dsmd_file_from_datafolder(
        root_dir, c2l_path, dsmd_path, classnames=None):
    """ Generate classification dataset metadata file from DataFolder for
    specified classes.
Severity: Minor
Found in medvision/dataset/classification.py - About 35 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function load_det_dsmd has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
Open

def load_det_dsmd(
    dsmd_path: Union[str, Path],
    class2label: Union[str, Dict[str, int]]
):
    """ load detection dataset metadata.
Severity: Minor
Found in medvision/dataset/detection.py - About 35 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function load_rws_contour has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
Open

def load_rws_contour(paths):
    """ Load rws file (in general contour format).

    Args:
        paths (str or list): rws file path(s).
Severity: Minor
Found in medvision/annotation/rws.py - About 35 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function copyfiles has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
Open

def copyfiles(src_paths, dst_dir, src_root=None, non_overwrite=False):
    assert isdir(dst_dir)
    assert mv.isarrayinstance(src_paths)

    cp_func = non_overwrite_cp if non_overwrite else cp
Severity: Minor
Found in medvision/util/fileutil.py - About 35 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function split_dsmd_file has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def split_dsmd_file(dsmd_filepath,
                    datasplit=None,
                    shuffle=True,
                    suffix='.csv'):
    """ Split a dataset medadata file into 3 parts.
Severity: Minor
Found in medvision/dataset/util.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function imshow has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def imshow(
    imgs,
    num_cols=None,
    fig_name=None,
    titles='',
Severity: Minor
Found in medvision/visualization/image.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function dcmread has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

def dcmread(
    path: Union[str, Path],
    read_header: bool = False,
    itk_handler_enabled: bool = True
):
Severity: Minor
Found in medvision/dicom/io.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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