Avoid deeply nested control flow statements.

Open

                } else if ( match[ 2 ] ) {
                    push.apply( results, context.getElementsByTagName( selector ) );
                    return results;

                // Class selector

Avoid deeply nested control flow statements.

Open

                                    if ( ( ofType ?
                                        node.nodeName.toLowerCase() === name :
                                        node.nodeType === 1 ) &&
                                        ++diff ) {

Avoid deeply nested control flow statements.

Open

                        if ( matchedSelectors[ sel ] === undefined ) {
                            matchedSelectors[ sel ] = handleObj.needsContext ?
                                jQuery( sel, this ).index( cur ) > -1 :
                                jQuery.find( sel, this, null, [ cur ] ).length;
                        }

Avoid deeply nested control flow statements.

Open

                        if ( matchedSelectors[ sel ] ) {
                            matchedHandlers.push( handleObj );
                        }

Avoid deeply nested control flow statements.

Open

                    if ( copyIsArray && !Array.isArray( src ) ) {
                        clone = [];
                    } else if ( !copyIsArray && !jQuery.isPlainObject( src ) ) {
                        clone = {};
                    } else {

Avoid deeply nested control flow statements.

Open

                                    if ( ofType ?
                                        node.nodeName.toLowerCase() === name :
                                        node.nodeType === 1 ) {

                                        return false;

Avoid deeply nested control flow statements.

Open

                    if ( !selector ) {
                        push.apply( results, seed );
                        return results;
                    }

Avoid deeply nested control flow statements.

Open

                        if ( node && node.value === id ) {
                            return [ elem ];
                        }

Avoid deeply nested control flow statements.

Open

                        if ( attrs[ i ] ) {
                            name = attrs[ i ].name;
                            if ( name.indexOf( "data-" ) === 0 ) {
                                name = camelCase( name.slice( 5 ) );
                                dataAttr( elem, name, data[ name ] );

Avoid deeply nested control flow statements.

Open

                        for ( type in data.events ) {
                            if ( special[ type ] ) {
                                jQuery.event.remove( elem, type );

                            // This is a shortcut to avoid jQuery.event.remove's overhead

Avoid deeply nested control flow statements.

Open

                } else if ( copy !== undefined ) {
                    target[ name ] = copy;
                }

Avoid deeply nested control flow statements.

Open

                        for ( match in context ) {

                            // Properties of context are called as methods if possible
                            if ( isFunction( this[ match ] ) ) {
                                this[ match ]( context[ match ] );

Avoid deeply nested control flow statements.

Open

                    if ( restoreDisplay == null ) {
                        display = style.display;
                        restoreDisplay = display === "none" ? "" : display;
                    }

Function dcl_loss has 6 arguments (exceeds 4 allowed). Consider refactoring.

Open

def dcl_loss(

Function mask_outliers has 6 arguments (exceeds 4 allowed). Consider refactoring.

Open

def mask_outliers(

Function plot_stationary_entropy has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

def plot_stationary_entropy(
    coordinates: coordinates,
    embeddings: table_dict,
    soft_counts: table_dict,
    breaks: table_dict = None,

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Function close_single_contact has 6 arguments (exceeds 4 allowed). Consider refactoring.

Open

def close_single_contact(

Function climb_wall has 6 arguments (exceeds 4 allowed). Consider refactoring.

Open

def climb_wall(

Function __init__ has 6 arguments (exceeds 4 allowed). Consider refactoring.

Open

    def __init__(

Function _fit_hmm_range has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

def _fit_hmm_range(concat_embeddings, states, min_states, max_states):
    """Auxiliary function for fitting a range of HMMs with different number of states.

    Args:
        concat_embeddings (np.ndarray): Concatenated embeddings across all animal experiments.

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