lucasmiranda42/deepof

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Consider simplifying this complex logical expression.
Open

                        if ( forward && useCache ) {

                            // Seek `elem` from a previously-cached index

                            // ...in a gzip-friendly way
Severity: Critical
Found in docs/build/html/_static/jquery-3.6.0.js - About 2 hrs to fix

    Function deepEq has 66 lines of code (exceeds 25 allowed). Consider refactoring.
    Open

      function deepEq(a, b, aStack, bStack) {
        // Unwrap any wrapped objects.
        if (a instanceof _$1) a = a._wrapped;
        if (b instanceof _$1) b = b._wrapped;
        // Compare `[[Class]]` names.
    Severity: Major
    Found in docs/build/html/_static/underscore-1.13.1.js - About 2 hrs to fix

      Function __init__ has 21 arguments (exceeds 4 allowed). Consider refactoring.
      Open

          def __init__(
      Severity: Major
      Found in deepof/data.py - About 2 hrs to fix

        Function superMatcher has 65 lines of code (exceeds 25 allowed). Consider refactoring.
        Open

                superMatcher = function( seed, context, xml, results, outermost ) {
                    var elem, j, matcher,
                        matchedCount = 0,
                        i = "0",
                        unmatched = seed && [],
        Severity: Major
        Found in docs/build/html/_static/jquery-3.6.0.js - About 2 hrs to fix

          Function supervised_tagging has a Cognitive Complexity of 19 (exceeds 5 allowed). Consider refactoring.
          Open

          def supervised_tagging(
              coord_object: coordinates,
              raw_coords: table_dict,
              coords: table_dict,
              dists: table_dict,
          Severity: Minor
          Found in deepof/annotation_utils.py - About 2 hrs to fix

          Cognitive Complexity

          Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

          A method's cognitive complexity is based on a few simple rules:

          • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
          • Code is considered more complex for each "break in the linear flow of the code"
          • Code is considered more complex when "flow breaking structures are nested"

          Further reading

          Function plot_enrichment has 20 arguments (exceeds 4 allowed). Consider refactoring.
          Open

          def plot_enrichment(
          Severity: Major
          Found in deepof/visuals.py - About 2 hrs to fix

            Function performObjectSearch has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.
            Open

              performObjectSearch: (object, objectTerms) => {
                const filenames = Search._index.filenames;
                const docNames = Search._index.docnames;
                const objects = Search._index.objects;
                const objNames = Search._index.objnames;
            Severity: Minor
            Found in docs/build/html/_static/searchtools.js - About 2 hrs to fix

            Cognitive Complexity

            Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

            A method's cognitive complexity is based on a few simple rules:

            • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
            • Code is considered more complex for each "break in the linear flow of the code"
            • Code is considered more complex when "flow breaking structures are nested"

            Further reading

            Function get_training_set has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.
            Open

                def get_training_set(
                    self, current_table_dict: table_dict, test_videos: int = 0
                ) -> tuple:
                    """Generate training and test sets as numpy.array objects for model training.
            
            
            Severity: Minor
            Found in deepof/data.py - About 2 hrs to fix

            Cognitive Complexity

            Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

            A method's cognitive complexity is based on a few simple rules:

            • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
            • Code is considered more complex for each "break in the linear flow of the code"
            • Code is considered more complex when "flow breaking structures are nested"

            Further reading

            Function get_areas has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.
            Open

                def get_areas(self, speed: int = 0, selected_id: str = "all") -> table_dict:
                    """Return a table_dict object with all relevant areas (head, torso, back, full). Unless specified otherwise, the areas are computed for all animals.
            
                    Args:
                        speed (int): The derivative to use for speed.
            Severity: Minor
            Found in deepof/data.py - About 2 hrs to fix

            Cognitive Complexity

            Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

            A method's cognitive complexity is based on a few simple rules:

            • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
            • Code is considered more complex for each "break in the linear flow of the code"
            • Code is considered more complex when "flow breaking structures are nested"

            Further reading

            Function plot_enrichment has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.
            Open

            def plot_enrichment(
                coordinates: coordinates,
                embeddings: table_dict = None,
                soft_counts: table_dict = None,
                breaks: table_dict = None,
            Severity: Minor
            Found in deepof/visuals.py - About 2 hrs to fix

            Cognitive Complexity

            Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

            A method's cognitive complexity is based on a few simple rules:

            • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
            • Code is considered more complex for each "break in the linear flow of the code"
            • Code is considered more complex when "flow breaking structures are nested"

            Further reading

            Function _process_animation_data has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.
            Open

            def _process_animation_data(
                coordinates,
                experiment_id,
                animal_id,
                center,
            Severity: Minor
            Found in deepof/visuals.py - About 2 hrs to fix

            Cognitive Complexity

            Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

            A method's cognitive complexity is based on a few simple rules:

            • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
            • Code is considered more complex for each "break in the linear flow of the code"
            • Code is considered more complex when "flow breaking structures are nested"

            Further reading

            Function domManip has 60 lines of code (exceeds 25 allowed). Consider refactoring.
            Open

            function domManip( collection, args, callback, ignored ) {
            
                // Flatten any nested arrays
                args = flat( args );
            
            
            Severity: Major
            Found in docs/build/html/_static/jquery-3.6.0.js - About 2 hrs to fix

              Function ajaxConvert has 59 lines of code (exceeds 25 allowed). Consider refactoring.
              Open

              function ajaxConvert( s, response, jqXHR, isSuccess ) {
                  var conv2, current, conv, tmp, prev,
                      converters = {},
              
                      // Work with a copy of dataTypes in case we need to modify it for conversion
              Severity: Major
              Found in docs/build/html/_static/jquery-3.6.0.js - About 2 hrs to fix

                Function highlightText has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
                Open

                jQuery.fn.highlightText = function(text, className) {
                    function highlight(node, addItems) {
                        if (node.nodeType === 3) {
                            var val = node.nodeValue;
                            var pos = val.toLowerCase().indexOf(text);
                Severity: Minor
                Found in docs/build/html/_static/_sphinx_javascript_frameworks_compat.js - About 2 hrs to fix

                Cognitive Complexity

                Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                A method's cognitive complexity is based on a few simple rules:

                • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                • Code is considered more complex for each "break in the linear flow of the code"
                • Code is considered more complex when "flow breaking structures are nested"

                Further reading

                Function set_up_project_directory has a Cognitive Complexity of 17 (exceeds 5 allowed). Consider refactoring.
                Open

                    def set_up_project_directory(self, debug=False):
                        """Create a project directory where to save all produced results."""
                        # Create a project directory, as well as subfolders for videos and tables
                        project_path = os.path.join(self.project_path, self.project_name)
                
                
                Severity: Minor
                Found in deepof/data.py - About 2 hrs to fix

                Cognitive Complexity

                Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                A method's cognitive complexity is based on a few simple rules:

                • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                • Code is considered more complex for each "break in the linear flow of the code"
                • Code is considered more complex when "flow breaking structures are nested"

                Further reading

                Function init has 54 lines of code (exceeds 25 allowed). Consider refactoring.
                Open

                    init = jQuery.fn.init = function( selector, context, root ) {
                        var match, elem;
                
                        // HANDLE: $(""), $(null), $(undefined), $(false)
                        if ( !selector ) {
                Severity: Major
                Found in docs/build/html/_static/jquery-3.6.0.js - About 2 hrs to fix

                  Function plot_heatmaps has 17 arguments (exceeds 4 allowed). Consider refactoring.
                  Open

                  def plot_heatmaps(
                  Severity: Major
                  Found in deepof/visuals.py - About 2 hrs to fix

                    Function supervised_annotation has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.
                    Open

                        def supervised_annotation(
                            self,
                            params: Dict = {},
                            center: str = "Center",
                            align: str = "Spine_1",
                    Severity: Minor
                    Found in deepof/data.py - About 2 hrs to fix

                    Cognitive Complexity

                    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                    A method's cognitive complexity is based on a few simple rules:

                    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                    • Code is considered more complex for each "break in the linear flow of the code"
                    • Code is considered more complex when "flow breaking structures are nested"

                    Further reading

                    Function load_table has a Cognitive Complexity of 16 (exceeds 5 allowed). Consider refactoring.
                    Open

                    def load_table(
                        tab: str,
                        table_path: str,
                        table_format: str,
                        rename_bodyparts: list = None,
                    Severity: Minor
                    Found in deepof/utils.py - About 2 hrs to fix

                    Cognitive Complexity

                    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                    A method's cognitive complexity is based on a few simple rules:

                    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                    • Code is considered more complex for each "break in the linear flow of the code"
                    • Code is considered more complex when "flow breaking structures are nested"

                    Further reading

                    Function remove has 52 lines of code (exceeds 25 allowed). Consider refactoring.
                    Open

                        remove: function( elem, types, handler, selector, mappedTypes ) {
                    
                            var j, origCount, tmp,
                                events, t, handleObj,
                                special, handlers, type, namespaces, origType,
                    Severity: Major
                    Found in docs/build/html/_static/jquery-3.6.0.js - About 2 hrs to fix
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