ncbo/bioportal_web_ui

Function NCBOTree has 309 lines of code (exceeds 25 allowed). Consider refactoring.

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  var NCBOTree = function(element, opt) {
    var _this = this;
    var OPTIONS;
    var ROOT_ID = "roots";
    var mousePressed = false;

File jquery.ncbo.tree-2.0.1.js has 331 lines of code (exceeds 250 allowed). Consider refactoring.

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/*
* jQuery SimpleTree Drag&Drop plugin
* Update on 22th May 2008
* Version 0.3
*

Function setTreeNodes has 55 lines of code (exceeds 25 allowed). Consider refactoring.

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    var setTreeNodes = function(obj, useParent) {
      obj = useParent ? obj.parent() : obj;
      $('li>a', obj).addClass('text').bind('selectstart', function() {
        return false;
      }).click(function() {

Function setAjaxNodes has 38 lines of code (exceeds 25 allowed). Consider refactoring.

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    var setAjaxNodes = function(node, parentId, successCallback, errorCallback) {
      if (typeof OPTIONS.beforeExpand == 'function') {
        OPTIONS.beforeExpand(node);
      }
      $TREE_CONTAINER.trigger("beforeExpand", node);

Function init has 27 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    this.init = function() {
      $TREE_CONTAINER = element;
      TREE = $("<ul>").append($("<li>").addClass("root"));
      ROOT = $('.root', TREE);
      TREE.css("width", OPTIONS.width).addClass(OPTIONS.treeClass);

Function formatNodes has 26 lines of code (exceeds 25 allowed). Consider refactoring.

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    var formatNodes = function(nodes) {
      var holder = $("<span>");
      var ul = $("<ul>")

      // Sort by prefLabel

Similar blocks of code found in 3 locations. Consider refactoring.

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    var setTreeNodes = function(obj, useParent) {
      obj = useParent ? obj.parent() : obj;
      $('li>a', obj).addClass('text').bind('selectstart', function() {
        return false;
      }).click(function() {

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Identical blocks of code found in 2 locations. Consider refactoring.

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    var formatNodes = function(nodes) {
      var holder = $("<span>");
      var ul = $("<ul>")

      // Sort by prefLabel

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Similar blocks of code found in 3 locations. Consider refactoring.

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    this.init = function() {
      $TREE_CONTAINER = element;
      TREE = $("<ul>").append($("<li>").addClass("root"));
      ROOT = $('.root', TREE);
      TREE.css("width", OPTIONS.width).addClass(OPTIONS.treeClass);

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Similar blocks of code found in 2 locations. Consider refactoring.

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    var setAjaxNodes = function(node, parentId, successCallback, errorCallback) {
      if (typeof OPTIONS.beforeExpand == 'function') {
        OPTIONS.beforeExpand(node);
      }
      $TREE_CONTAINER.trigger("beforeExpand", node);

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Similar blocks of code found in 3 locations. Consider refactoring.

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    this.jumpToClass = function(cls, callback) {
      ROOT.html($("<span>").html("Loading...").css("font-size", "smaller"));
      $.ajax({
        url: determineHTTPS(OPTIONS.ncboAPIURL) + "/ontologies/" + OPTIONS.ontology + "/classes/" + encodeURIComponent(cls) + "/tree",
        data: {apikey: OPTIONS.apikey, include: "prefLabel,hasChildren", no_context: true},

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Identical blocks of code found in 3 locations. Consider refactoring.

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    var initAutocomplete = function() {
      // Add the autocomplete
      var autocompleteContainer = $("<div>").addClass(OPTIONS.autocompleteClass).addClass("ncboTree");
      var input = $("<input>")
        .addClass(OPTIONS.autocompleteClass)

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Similar blocks of code found in 3 locations. Consider refactoring.

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  $.fn.NCBOTree = function(options) {
    return this.each(function() {
      var $this = $(this);

      // Return early if this element already has a plugin instance

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Similar blocks of code found in 3 locations. Consider refactoring.

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    var findRootNode = function(nodes) {
      var startingRoot = (OPTIONS.startingRoot == OPTIONS.defaultRoot) ? null : OPTIONS.startingRoot;
      if (startingRoot == null) {return nodes;}

      var foundNode = false;

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Identical blocks of code found in 3 locations. Consider refactoring.

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    var nodeToggle = function(obj) {
      var childUl = $('>ul',obj);
      if (childUl.is(':visible')) {
        obj.className = obj.className.replace('open','close');
        childUl.hide();

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Identical blocks of code found in 4 locations. Consider refactoring.

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    this.selectedClass = function() {
      var cls = $(TREE.find("a.active")[0]);
      if (cls.length == 0) {
        return null;
      } else {

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Identical blocks of code found in 3 locations. Consider refactoring.

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    var closeNearby = function(obj) {
      $(obj).siblings().filter('.folder-open, .folder-open-last').each(function() {
        var childUl = $('>ul',this);
        var className = this.className;
        this.className = className.replace('open', 'close');

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Identical blocks of code found in 4 locations. Consider refactoring.

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    OPTIONS = {
      autoclose:         false,
      beforeExpand:      false,
      afterExpand:       false,
      afterExpandError:  false,

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Identical blocks of code found in 3 locations. Consider refactoring.

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    this.changeOntology = function(ont) {
      var newTree = $("<ul>").append($("<li>").addClass("root"));
      $TREE_CONTAINER.html("");
      TREE = newTree;
      OPTIONS.ontology = ont;

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Identical blocks of code found in 3 locations. Consider refactoring.

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    this.selectClass = function(cls) {
      var foundClass = $(TREE.find("a[data-id='" + encodeURIComponent(cls) + "']"));
      $(TREE.find("a.active")[0]).removeClass("active");
      foundClass.addClass("active");
    }

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Identical blocks of code found in 3 locations. Consider refactoring.

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    var setTrigger = function(node) {
      $('>a',node).before('<img class="trigger" src="data:image/gif;base64,R0lGODlhAQABAID/AMDAwAAAACH5BAEAAAAALAAAAAABAAEAAAICRAEAOw==" border=0>');
      var trigger = $('>.trigger', node);
      trigger.click(function(event) {
        nodeToggle(node);

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