openpathsampling/openpathsampling-cli

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Merge pull request #74 from dwhswenson/back-to-green #312
David W.H. Swenson authored ccd7c309
complete00:00:12
1
git clone
2
codeclimate validate-config
View output
codeclimate validate-config
No checked in config: nothing to validate.
3
codeclimate prepare
View output
codeclimate prepare
4
builder pull-engines
View output
determining required images
5
structure
View output
12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
6
duplication
View output
12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
I, [2024-04-23T16:51:09.631314 #1]  INFO -- : Skipping file ./paths_cli/compiling/plugins.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 22
    return (f"CompilerPlugin({self.plugin_class.__name__}, "
                                                           ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.636159 #1]  INFO -- : Skipping file ./paths_cli/compiling/errors.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 6
    msg = f"'{value}' is not a valid input for {attr}"
                                                     ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.649500 #1]  INFO -- : Skipping file ./paths_cli/compiling/strategies.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 11
    return f"openpathsampling.strategies.{class_name}"
                                                     ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.672634 #1]  INFO -- : Skipping file ./paths_cli/compiling/cvs.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 18
    raise InputError(f"No function called {source} in {self.package}")
                                                                    ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.681018 #1]  INFO -- : Skipping file ./paths_cli/compiling/_gendocs/docs_generator.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 54
    rst = f".. _compiling--{category_plugin.label}:\n\n"
                                                       ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.693845 #1]  INFO -- : Skipping file ./paths_cli/compiling/_gendocs/json_type_handlers.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 86
    rst = f"{self.type_name}"
                            ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.725498 #1]  INFO -- : Skipping file ./paths_cli/compiling/core.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 30
    def __init__(self, name, loader, *, json_type=None, description=None,
                                      ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.748374 #1]  INFO -- : Skipping file ./paths_cli/compiling/tools.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 32
    raise InputError(f"Positive integer required; found {val}")
                                                             ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.759897 #1]  INFO -- : Skipping file ./paths_cli/compiling/json_type.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 3
    return {"$ref": f"#/definitions/{category}_type"}
                                                   ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.760668 #1]  INFO -- : Skipping file ./paths_cli/compiling/root_compiler.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 80
    f"The category '{plugin.name}' has been reserved by another plugin"
                                                                      ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.791906 #1]  INFO -- : Skipping file ./paths_cli/wizard/errors.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 30
    retry = wizard.ask(f"Hey, it looks like you don't have {package} "
                                                                     ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.792185 #1]  INFO -- : Skipping file ./paths_cli/wizard/plugin_classes.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 48
    def __init__(self, category, *, obj_name=None, store_name=None,
                                  ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.804165 #1]  INFO -- : Skipping file ./paths_cli/wizard/shooting.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 23
    l_0 = wizard.ask_custom_eval(f"At what value of {cv.name} should the "
                                                                         ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.806108 #1]  INFO -- : Skipping file ./paths_cli/wizard/volumes.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 141
    return f"What describes this {obj}?"
                                       ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.816710 #1]  INFO -- : Skipping file ./paths_cli/wizard/cvs.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 86
    atoms_str = wizard.ask(f"Which atoms do you want to {cv_user_str}?",
                                                                      ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.829645 #1]  INFO -- : Skipping file ./paths_cli/wizard/parameters.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 39
    def __init__(self, name, ask, loader, *, helper=None, default=NO_DEFAULT,
                                           ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.840106 #1]  INFO -- : Skipping file ./paths_cli/wizard/load_from_ops.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 26
    f"What's the name of the {obj_name} you want to load?",
                                                         ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.841890 #1]  INFO -- : Skipping file ./paths_cli/wizard/plugin_registration.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 39
    f"No wizard plugin for '{category}'"
                                       ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.853426 #1]  INFO -- : Skipping file ./paths_cli/wizard/pause.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 52
    raise RuntimeError(f"Unknown pause style: '{style}'") from exc
                                                       ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.865356 #1]  INFO -- : Skipping file ./paths_cli/wizard/standard_categories.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 49
    raise RuntimeError(f"No category {category}. Names and store name "
                                                                      ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.888366 #1]  INFO -- : Skipping file ./paths_cli/wizard/core.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 21
    string += f"at least {min_}"
                               ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.899900 #1]  INFO -- : Skipping file ./paths_cli/wizard/wizard.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 23
    def print(self, *content):
            ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.900824 #1]  INFO -- : Skipping file ./paths_cli/wizard/two_state_tps.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 31
    ...  # no-cov  (will add this later)
    ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.913448 #1]  INFO -- : Skipping file ./paths_cli/wizard/joke.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 21
    return (f"I probably would have named it something like "
                                                            ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.925463 #1]  INFO -- : Skipping file ./paths_cli/wizard/helper.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 134
    result += "\n".join([f"* !{cmd}"
                                   ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.929443 #1]  INFO -- : Skipping file paths_cli/plugin_management.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 37
    f"The plugin {repr(self)} has been previously "
                                                  ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:09.965285 #1]  INFO -- : Skipping file paths_cli/param_core.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 34
    return click.option(*self.args, **self.kwargs, required=required)
                                                 ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:10.002363 #1]  INFO -- : Skipping file ./paths_cli/commands/compile.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 23
    msg = f"Unable to find a compiler for {format_type} on your system."
                                                                       ^
SyntaxError: invalid syntax


I, [2024-04-23T16:51:10.016563 #1]  INFO -- : Skipping file ./paths_cli/commands/contents.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 60
    logger.debug(f"Working on {attr}")
                                    ^
SyntaxError: invalid syntax