Function auto_detect_sample_row has 46 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  auto_detect_sample_row: function() {
        
    // We need a separate canvas to draw the snapshot, whenever we try to auto detect the sample row.
    if ($('#autoDetectCanvas').length == 0) {
      $('body').append("<canvas style='display:none;' id='autoDetectCanvas'></canvas>")

Method openid_authentication has 44 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def openid_authentication(openid_url, back_to)
    # puts openid_url
    authenticate_with_open_id(openid_url, required: %i(nickname email fullname)) do |result, identity_url, registration|
      dummy_identity_url = identity_url
      dummy_identity_url = dummy_identity_url.split('/')

Method update has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.

Open

  def update
    @spectrum = Spectrum.find(params[:id])
    require_ownership(@spectrum)

    @spectrum.title = params[:spectrum][:title] unless params[:spectrum].nil? || params[:spectrum][:title].nil?

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Method index has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.

Open

  def index
    @offline = 'flush'
    if logged_in?
      if params[:calibration_id] == 'calibration'
        @calibration = nil

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Method index2 has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.

Open

  def index2
    @offline = 'flush'
    if logged_in?
      if params[:calibration_id] == 'calibration'
        @calibration = nil

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Method index has 42 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def index
    if params[:set_id]
      @set = Set.find params[:set_id]
      render partial: 'tags/inlineList', locals: { datum: @set }, layout: false
    elsif params[:spectrum_id]

Method create has 40 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def create
    @response = {
      errors: [],
      saved: {}
    }

Method destroy has 40 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def destroy
    @tag = Tag.find(params[:id])
    if @tag
      if @tag.user_id == current_user.id || current_user.role == 'admin'
        if @tag.is_deletable?

Function toggle_rotation has 37 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  toggle_rotation: function() {
    $W.rotated = !$W.rotated
    if ($W.rotated == true) $('.btn-rotate').addClass('active');
    else                    $('.btn-rotate').removeClass('active');
    var style = $('#heightIndicator')[0].style

Function setup has 36 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    setup: function(min_width,min_height,min_slope,threshold,pixels,wavelengths) {
      min_width = min_width || 7 // min peak width to search for
      min_height = min_height || 20 // min peak width to search for
      min_slope = 3 // minimum peak slope to search for, where 1 = 45 deg
      threshold = threshold || min_width // ignore peaks within <threshold> distance of each other

Method search has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

  def search
    id = params[:id]
    range = params[:fit]
    range ||= 100

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Method generate_hashed_values has 35 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def generate_hashed_values
    lines = latest_json_data['lines']

    values = {}
    counts = {}

Method save has 34 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def save
    # be sure there's a "login" field here too, so users don't lose data when they're required to log in.
    @spectrum = Spectrum.new(
      title: params[:title],
      author: current_user.login,

Method search has 33 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def search
    id = params[:id]
    range = params[:fit]
    range ||= 100

Method new has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring.

Open

  def new
    back_to = params[:back_to]
    # we pass a temp username; it'll be overwritten by the real one in PublicLab.org's response:
    open_id = 'x'
    openid_url = URI.decode(open_id)

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Function setSampleRowClickListener has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring.

Open

  setSampleRowClickListener: function() {
    $('#webcam').click(function(e){
      var offX, offY;
      if (!(e.offsetX || e.offsetY)) {
        offX = e.pageX - $(e.target).offset().left;

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Method find_similar has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring.

Open

  def find_similar(range)
    proc_nil = false

    if processed_spectrum.nil?
      spectra = []

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Function updateLegend has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring.

Open

  updateLegend: function() {
    $W.updateLegendTimeout = null;

    var pos = $W.latestPosition;

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Function getCrossSection has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring.

Open

  getCrossSection: function(video) {
    // draw the new data on the top row of pixels of the canvas, overwriting what's there now
    if ($W.mobile) {
      // this is only for the deprecated mobile version
      $W.ctx.scale(3,1)

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Method show has 28 lines of code (exceeds 25 allowed). Consider refactoring.

Open

  def show
    @spectrum = Spectrum.find(params[:id])
    respond_with(@spectrum) do |format|
      format.html do
        # temporary routing until we deprecate 1.0 paths to /legacy