sanger/limber

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extend stock plate as input plate to other pipelines #3100
Wendy Yang authored 56c7ee18
complete00:00:28
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git clone
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codeclimate validate-config
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codeclimate validate-config
No errors or warnings found in .codeclimate.json.
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codeclimate prepare
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codeclimate prepare
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builder pull-engines
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determining required images
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structure
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Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
W, [2024-09-11T18:58:31.618259 #1]  WARN -- : Skipping app/frontend/javascript/shared/transfersLayouts.js due to CC::Parser::Client::HTTPError
W, [2024-09-11T18:58:31.618298 #1]  WARN -- : Response status: 422
W, [2024-09-11T18:58:32.120080 #1]  WARN -- : Skipping app/frontend/javascript/multi-stamp/components/MultiStampLibrarySplitter.js due to CC::Parser::Client::HTTPError
W, [2024-09-11T18:58:32.120377 #1]  WARN -- : Response status: 422
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duplication
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Parser process id: 14
codeclimate-parser socket not present
waiting 1s...
W, [2024-09-11T18:58:41.854040 #1]  WARN -- : Skipping app/frontend/javascript/shared/transfersLayouts.js due to CC::Parser::Client::HTTPError
W, [2024-09-11T18:58:41.854095 #1]  WARN -- : Response status: 422
W, [2024-09-11T18:58:42.600513 #1]  WARN -- : Skipping app/frontend/javascript/multi-stamp/components/MultiStampLibrarySplitter.js due to CC::Parser::Client::HTTPError
W, [2024-09-11T18:58:42.600571 #1]  WARN -- : Response status: 422
I, [2024-09-11T18:58:43.623207 #1]  INFO -- : Skipping file ./app/models/labels/tube_label.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :first_line))

I, [2024-09-11T18:58:44.102422 #1]  INFO -- : Skipping file ./app/models/labware_creators/pcr_cycles_binned_plate/csv_file_base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pcr_cycles_binned_plate/csv_file_base.rb:18 :: parse error on value ":" (tCOLON)

I, [2024-09-11T18:58:44.639818 #1]  INFO -- : Skipping file ./app/models/labware_creators/custom_pooled_tubes/csv_file.rb due to exception (Racc::ParseError): ./app/models/labware_creators/custom_pooled_tubes/csv_file.rb:12 :: parse error on value ":" (tCOLON)

I, [2024-09-11T18:58:44.734921 #1]  INFO -- : Skipping file ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack.rb due to exception (Racc::ParseError): ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack.rb:54 :: parse error on value "]" (tRBRACK)

I, [2024-09-11T18:58:44.760039 #1]  INFO -- : Skipping file ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack_with_rack_barcode.rb due to exception (Racc::ParseError): ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack_with_rack_barcode.rb:31 :: parse error on value "]" (tRBRACK)

I, [2024-09-11T18:58:45.058417 #1]  INFO -- : Skipping file ./app/controllers/robots_controller.rb due to exception (Racc::ParseError): ./app/controllers/robots_controller.rb:14 :: parse error on value ":" (tCOLON)

I, [2024-09-11T18:58:45.316433 #1]  INFO -- : Skipping file ./lib/well_helpers.rb due to exception (Racc::ParseError): ./lib/well_helpers.rb:9 :: parse error on value ":" (tCOLON)