sanger/limber

View on GitHub
style: update rubocop todo #3181
Stephen Hulme authored 4855e72b
complete00:00:21
1
git clone
2
codeclimate validate-config
View output
codeclimate validate-config
No errors or warnings found in .codeclimate.json.
3
codeclimate prepare
View output
codeclimate prepare
4
builder pull-engines
View output
determining required images
5
structure
View output
12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
W, [2024-09-20T10:13:57.843368 #1]  WARN -- : Skipping app/frontend/javascript/shared/transfersLayouts.js due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:57.843399 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:58.214000 #1]  WARN -- : Skipping app/frontend/javascript/multi-stamp/components/MultiStampLibrarySplitter.js due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:58.214048 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:59.126613 #1]  WARN -- : Skipping app/models/ongoing_tube.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:59.126659 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:59.168494 #1]  WARN -- : Skipping app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:59.168523 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:59.209075 #1]  WARN -- : Skipping app/models/concerns/presenters/creation_behaviour.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:59.209105 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:59.217104 #1]  WARN -- : Skipping app/models/concerns/presenters/extended_csv.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:59.217143 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:59.279067 #1]  WARN -- : Skipping app/models/concerns/labware_creators/tagged_plate_behaviour.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:59.279095 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:59.312130 #1]  WARN -- : Skipping app/models/ongoing_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:59.312157 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:59.401713 #1]  WARN -- : Skipping app/models/utility/pcr_cycles_csv_file_upload_config_base.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:59.401752 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:59.572576 #1]  WARN -- : Skipping app/models/presenters/plate_presenter.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:59.572604 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:59.651840 #1]  WARN -- : Skipping app/models/labels/tube_label.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:59.651868 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:59.694674 #1]  WARN -- : Skipping app/models/labels/tube_label_traction_compatible.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:59.694710 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:59.771957 #1]  WARN -- : Skipping app/models/state_changers.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:59.771994 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:59.796460 #1]  WARN -- : Skipping app/models/robots/bed/plate_to_tube_racks_bed.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:59.796513 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:59.953615 #1]  WARN -- : Skipping app/models/labware_metadata.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:59.953648 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:13:59.965648 #1]  WARN -- : Skipping app/models/print_job.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:13:59.965674 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.037572 #1]  WARN -- : Skipping app/models/limber/qc_file.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.037601 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.083854 #1]  WARN -- : Skipping app/models/sequencescape_submission.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.083884 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.146506 #1]  WARN -- : Skipping app/models/labware_creators/final_tube.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.146533 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.366686 #1]  WARN -- : Skipping app/models/labware_creators/tagged_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.366727 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.432032 #1]  WARN -- : Skipping app/models/labware_creators/quadrant_split_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.432060 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.442667 #1]  WARN -- : Skipping app/models/labware_creators/pooled_tubes_by_submission_with_phi_x.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.442695 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.491851 #1]  WARN -- : Skipping app/models/labware_creators/multi_stamp_tubes.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.491879 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.501336 #1]  WARN -- : Skipping app/models/labware_creators/base.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.501363 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.507874 #1]  WARN -- : Skipping app/models/labware_creators/pooled_tubes_base.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.507901 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.518442 #1]  WARN -- : Skipping app/models/labware_creators/multi_plate_pool.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.518467 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.523698 #1]  WARN -- : Skipping app/models/labware_creators/custom_tagged_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.523723 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.597311 #1]  WARN -- : Skipping app/models/labware_creators/plate_split_to_tube_racks.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.597337 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.674609 #1]  WARN -- : Skipping app/models/labware_creators/quadrant_stamp_base.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.674636 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.678582 #1]  WARN -- : Skipping app/models/labware_creators/pooled_tubes_by_sample.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.678619 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.716265 #1]  WARN -- : Skipping app/models/labware_creators/final_tube_from_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.716295 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.777651 #1]  WARN -- : Skipping app/helpers/page_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.777678 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.781039 #1]  WARN -- : Skipping app/helpers/plate_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.781064 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.782706 #1]  WARN -- : Skipping app/helpers/labware_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.782731 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.785468 #1]  WARN -- : Skipping app/helpers/application_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.785493 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.815490 #1]  WARN -- : Skipping app/helpers/barcode_labels_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.815529 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.818773 #1]  WARN -- : Skipping app/controllers/qc_files_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.818806 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.845578 #1]  WARN -- : Skipping app/controllers/concerns/work_completion_behaviour.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.845604 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.849158 #1]  WARN -- : Skipping app/controllers/concerns/sequencescape_submission_behaviour.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.849182 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.868730 #1]  WARN -- : Skipping app/controllers/pipeline_work_in_progress_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.868763 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.874928 #1]  WARN -- : Skipping app/controllers/search_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.874953 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.935979 #1]  WARN -- : Skipping app/controllers/labware_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.936008 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:00.991605 #1]  WARN -- : Skipping app/controllers/robots_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:00.991639 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:01.000812 #1]  WARN -- : Skipping app/sequencescape/sequencescape/api/v2.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:01.000842 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:01.143660 #1]  WARN -- : Skipping app/sequencescape/sequencescape/api/v2/shared/has_requests.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:01.143698 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:01.287340 #1]  WARN -- : Skipping lib/well_helpers.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:01.287375 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:01.308204 #1]  WARN -- : Skipping lib/robot_configuration.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:01.308238 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:01.317727 #1]  WARN -- : Skipping lib/purpose_config.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:01.317752 #1]  WARN -- : Response status: 422
6
duplication
View output
12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
W, [2024-09-20T10:14:04.650756 #1]  WARN -- : Skipping app/frontend/javascript/shared/transfersLayouts.js due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:04.650786 #1]  WARN -- : Response status: 422
W, [2024-09-20T10:14:05.204545 #1]  WARN -- : Skipping app/frontend/javascript/multi-stamp/components/MultiStampLibrarySplitter.js due to CC::Parser::Client::HTTPError
W, [2024-09-20T10:14:05.204780 #1]  WARN -- : Response status: 422
I, [2024-09-20T10:14:05.546761 #1]  INFO -- : Skipping file ./app/models/ongoing_tube.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :states))

I, [2024-09-20T10:14:05.572826 #1]  INFO -- : Skipping file ./app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb due to exception (Racc::ParseError): ./app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb:8 :: parse error on value ")" (tRPAREN)

I, [2024-09-20T10:14:05.614657 #1]  INFO -- : Skipping file ./app/models/concerns/presenters/creation_behaviour.rb due to exception (Racc::ParseError): ./app/models/concerns/presenters/creation_behaviour.rb:29 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:05.622200 #1]  INFO -- : Skipping file ./app/models/concerns/presenters/extended_csv.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:lvar, :index))

I, [2024-09-20T10:14:05.671360 #1]  INFO -- : Skipping file ./app/models/concerns/labware_creators/tagged_plate_behaviour.rb due to exception (Racc::ParseError): ./app/models/concerns/labware_creators/tagged_plate_behaviour.rb:11 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:05.689975 #1]  INFO -- : Skipping file ./app/models/ongoing_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :states))

I, [2024-09-20T10:14:05.753305 #1]  INFO -- : Skipping file ./app/models/utility/pcr_cycles_csv_file_upload_config_base.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :input_amount_desired_min))

I, [2024-09-20T10:14:05.876312 #1]  INFO -- : Skipping file ./app/models/presenters/plate_presenter.rb due to exception (Racc::ParseError): ./app/models/presenters/plate_presenter.rb:39 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:05.936514 #1]  INFO -- : Skipping file ./app/models/labels/tube_label.rb due to exception (Racc::ParseError): ./app/models/labels/tube_label.rb:9 :: parse error on value ":" (tSYMBEG)

I, [2024-09-20T10:14:05.953830 #1]  INFO -- : Skipping file ./app/models/labels/tube_label_traction_compatible.rb due to exception (Racc::ParseError): ./app/models/labels/tube_label_traction_compatible.rb:30 :: parse error on value ":" (tSYMBEG)

I, [2024-09-20T10:14:06.005061 #1]  INFO -- : Skipping file ./app/models/state_changers.rb due to exception (Racc::ParseError): ./app/models/state_changers.rb:28 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:06.023818 #1]  INFO -- : Skipping file ./app/models/robots/bed/plate_to_tube_racks_bed.rb due to exception (Racc::ParseError): ./app/models/robots/bed/plate_to_tube_racks_bed.rb:20 :: parse error on value "," (tCOMMA)

I, [2024-09-20T10:14:06.107513 #1]  INFO -- : Skipping file ./app/models/labware_metadata.rb due to exception (Racc::ParseError): ./app/models/labware_metadata.rb:8 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:06.112656 #1]  INFO -- : Skipping file ./app/models/print_job.rb due to exception (Racc::ParseError): ./app/models/print_job.rb:10 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:06.157557 #1]  INFO -- : Skipping file ./app/models/limber/qc_file.rb due to exception (Racc::ParseError): ./app/models/limber/qc_file.rb:7 :: parse error on value ":" (tSYMBEG)

I, [2024-09-20T10:14:06.233171 #1]  INFO -- : Skipping file ./app/models/sequencescape_submission.rb due to exception (Racc::ParseError): ./app/models/sequencescape_submission.rb:39 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:06.271810 #1]  INFO -- : Skipping file ./app/models/labware_creators/final_tube.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :parents))

I, [2024-09-20T10:14:06.323886 #1]  INFO -- : Skipping file ./app/models/labware_creators/pcr_cycles_binned_plate/csv_file_base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pcr_cycles_binned_plate/csv_file_base.rb:18 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:06.436327 #1]  INFO -- : Skipping file ./app/models/labware_creators/tagged_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :tag_plate))

I, [2024-09-20T10:14:06.485910 #1]  INFO -- : Skipping file ./app/models/labware_creators/quadrant_split_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :uuid))

I, [2024-09-20T10:14:06.491945 #1]  INFO -- : Skipping file ./app/models/labware_creators/pooled_tubes_by_submission_with_phi_x.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pooled_tubes_by_submission_with_phi_x.rb:20 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:06.594959 #1]  INFO -- : Skipping file ./app/models/labware_creators/multi_stamp_tubes.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :transfers))

I, [2024-09-20T10:14:06.608046 #1]  INFO -- : Skipping file ./app/models/labware_creators/base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/base.rb:21 :: parse error on value "%i[" (error)

I, [2024-09-20T10:14:06.626930 #1]  INFO -- : Skipping file ./app/models/labware_creators/pooled_tubes_base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pooled_tubes_base.rb:26 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:06.639200 #1]  INFO -- : Skipping file ./app/models/labware_creators/multi_plate_pool.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :transfers))

I, [2024-09-20T10:14:06.687933 #1]  INFO -- : Skipping file ./app/models/labware_creators/custom_tagged_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :tag_plate))

I, [2024-09-20T10:14:06.784167 #1]  INFO -- : Skipping file ./app/models/labware_creators/plate_split_to_tube_racks.rb due to exception (Racc::ParseError): ./app/models/labware_creators/plate_split_to_tube_racks.rb:48 :: parse error on value "%i[" (error)

I, [2024-09-20T10:14:06.812771 #1]  INFO -- : Skipping file ./app/models/labware_creators/custom_pooled_tubes/csv_file.rb due to exception (Racc::ParseError): ./app/models/labware_creators/custom_pooled_tubes/csv_file.rb:12 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:06.839584 #1]  INFO -- : Skipping file ./app/models/labware_creators/quadrant_stamp_base.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :transfers))

I, [2024-09-20T10:14:06.849639 #1]  INFO -- : Skipping file ./app/models/labware_creators/pooled_tubes_by_sample.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pooled_tubes_by_sample.rb:20 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:06.894355 #1]  INFO -- : Skipping file ./app/models/labware_creators/final_tube_from_plate.rb due to exception (Racc::ParseError): ./app/models/labware_creators/final_tube_from_plate.rb:44 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:06.894480 #1]  INFO -- : Skipping file ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack.rb due to exception (Racc::ParseError): ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack.rb:54 :: parse error on value "]" (tRBRACK)

I, [2024-09-20T10:14:06.924246 #1]  INFO -- : Skipping file ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack_with_rack_barcode.rb due to exception (Racc::ParseError): ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack_with_rack_barcode.rb:31 :: parse error on value "]" (tRBRACK)

I, [2024-09-20T10:14:06.941675 #1]  INFO -- : Skipping file ./app/helpers/page_helper.rb due to exception (Racc::ParseError): ./app/helpers/page_helper.rb:5 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:06.951330 #1]  INFO -- : Skipping file ./app/helpers/plate_helper.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:lvar, :pool_id))

I, [2024-09-20T10:14:06.965437 #1]  INFO -- : Skipping file ./app/helpers/labware_helper.rb due to exception (Racc::ParseError): ./app/helpers/labware_helper.rb:5 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:06.975584 #1]  INFO -- : Skipping file ./app/helpers/application_helper.rb due to exception (Racc::ParseError): ./app/helpers/application_helper.rb:30 :: parse error on value ")" (tRPAREN)

I, [2024-09-20T10:14:07.015702 #1]  INFO -- : Skipping file ./app/helpers/barcode_labels_helper.rb due to exception (Racc::ParseError): ./app/helpers/barcode_labels_helper.rb:5 :: parse error on value ":" (tSYMBEG)

I, [2024-09-20T10:14:07.020651 #1]  INFO -- : Skipping file ./app/controllers/qc_files_controller.rb due to exception (Racc::ParseError): ./app/controllers/qc_files_controller.rb:11 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:07.059146 #1]  INFO -- : Skipping file ./app/controllers/concerns/work_completion_behaviour.rb due to exception (Racc::ParseError): ./app/controllers/concerns/work_completion_behaviour.rb:20 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:07.061462 #1]  INFO -- : Skipping file ./app/controllers/concerns/sequencescape_submission_behaviour.rb due to exception (Racc::ParseError): ./app/controllers/concerns/sequencescape_submission_behaviour.rb:23 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:07.162420 #1]  INFO -- : Skipping file ./app/controllers/pipeline_work_in_progress_controller.rb due to exception (Racc::ParseError): ./app/controllers/pipeline_work_in_progress_controller.rb:20 :: parse error on value "&." (error)

I, [2024-09-20T10:14:07.163054 #1]  INFO -- : Skipping file ./app/controllers/search_controller.rb due to exception (Racc::ParseError): ./app/controllers/search_controller.rb:8 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:07.250050 #1]  INFO -- : Skipping file ./app/controllers/labware_controller.rb due to exception (Racc::ParseError): ./app/controllers/labware_controller.rb:11 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:07.273018 #1]  INFO -- : Skipping file ./app/controllers/robots_controller.rb due to exception (Racc::ParseError): ./app/controllers/robots_controller.rb:14 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:07.309068 #1]  INFO -- : Skipping file ./app/sequencescape/sequencescape/api/v2.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :child_plates))

I, [2024-09-20T10:14:07.373090 #1]  INFO -- : Skipping file ./app/sequencescape/sequencescape/api/v2/shared/has_requests.rb due to exception (Racc::ParseError): ./app/sequencescape/sequencescape/api/v2/shared/has_requests.rb:44 :: parse error on value "&." (error)

I, [2024-09-20T10:14:07.460577 #1]  INFO -- : Skipping file ./lib/well_helpers.rb due to exception (Racc::ParseError): ./lib/well_helpers.rb:9 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:07.484089 #1]  INFO -- : Skipping file ./lib/robot_configuration.rb due to exception (Racc::ParseError): ./lib/robot_configuration.rb:9 :: parse error on value ":" (tCOLON)

I, [2024-09-20T10:14:07.501725 #1]  INFO -- : Skipping file ./lib/purpose_config.rb due to exception (Racc::ParseError): ./lib/purpose_config.rb:47 :: parse error on value ":" (tSYMBEG)