sanger/limber

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fix: remove use of strip which raises an exception on invalid chars #3191
Stephen Hulme authored 1a20dbb3
complete00:00:24
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git clone
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codeclimate validate-config
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codeclimate validate-config
No errors or warnings found in .codeclimate.json.
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codeclimate prepare
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codeclimate prepare
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builder pull-engines
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determining required images
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structure
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12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
W, [2024-09-20T11:45:14.068511 #1]  WARN -- : Skipping app/frontend/javascript/shared/transfersLayouts.js due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:14.068555 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:14.512991 #1]  WARN -- : Skipping app/frontend/javascript/multi-stamp/components/MultiStampLibrarySplitter.js due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:14.513032 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:15.938653 #1]  WARN -- : Skipping app/models/ongoing_tube.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:15.938690 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:15.993937 #1]  WARN -- : Skipping app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:15.993976 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:16.050602 #1]  WARN -- : Skipping app/models/concerns/presenters/creation_behaviour.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:16.050642 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:16.063887 #1]  WARN -- : Skipping app/models/concerns/presenters/extended_csv.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:16.063921 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:16.142931 #1]  WARN -- : Skipping app/models/concerns/labware_creators/tagged_plate_behaviour.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:16.142972 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:16.190507 #1]  WARN -- : Skipping app/models/ongoing_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:16.190552 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:16.301516 #1]  WARN -- : Skipping app/models/utility/pcr_cycles_csv_file_upload_config_base.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:16.301554 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:16.532735 #1]  WARN -- : Skipping app/models/presenters/plate_presenter.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:16.532778 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:16.623009 #1]  WARN -- : Skipping app/models/labels/tube_label.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:16.623054 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:16.684645 #1]  WARN -- : Skipping app/models/labels/tube_label_traction_compatible.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:16.684751 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:16.782165 #1]  WARN -- : Skipping app/models/state_changers.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:16.782202 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:16.820102 #1]  WARN -- : Skipping app/models/robots/bed/plate_to_tube_racks_bed.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:16.820140 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:16.978528 #1]  WARN -- : Skipping app/models/labware_metadata.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:16.978579 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:16.995247 #1]  WARN -- : Skipping app/models/print_job.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:16.995286 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.094243 #1]  WARN -- : Skipping app/models/limber/qc_file.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.094290 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.159236 #1]  WARN -- : Skipping app/models/sequencescape_submission.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.159277 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.246633 #1]  WARN -- : Skipping app/models/labware_creators/final_tube.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.246671 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.541339 #1]  WARN -- : Skipping app/models/labware_creators/tagged_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.541377 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.600859 #1]  WARN -- : Skipping app/models/labware_creators/quadrant_split_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.600897 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.613428 #1]  WARN -- : Skipping app/models/labware_creators/pooled_tubes_by_submission_with_phi_x.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.613461 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.680593 #1]  WARN -- : Skipping app/models/labware_creators/multi_stamp_tubes.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.680630 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.708409 #1]  WARN -- : Skipping app/models/labware_creators/base.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.708446 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.717472 #1]  WARN -- : Skipping app/models/labware_creators/pooled_tubes_base.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.717508 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.731837 #1]  WARN -- : Skipping app/models/labware_creators/multi_plate_pool.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.731873 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.740124 #1]  WARN -- : Skipping app/models/labware_creators/custom_tagged_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.740160 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.830438 #1]  WARN -- : Skipping app/models/labware_creators/plate_split_to_tube_racks.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.830479 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.914793 #1]  WARN -- : Skipping app/models/labware_creators/quadrant_stamp_base.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.914828 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.919424 #1]  WARN -- : Skipping app/models/labware_creators/pooled_tubes_by_sample.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.919461 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:17.964735 #1]  WARN -- : Skipping app/models/labware_creators/final_tube_from_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:17.964786 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.038601 #1]  WARN -- : Skipping app/helpers/page_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.038637 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.042537 #1]  WARN -- : Skipping app/helpers/plate_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.042590 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.044639 #1]  WARN -- : Skipping app/helpers/labware_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.044669 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.047680 #1]  WARN -- : Skipping app/helpers/application_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.047718 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.075725 #1]  WARN -- : Skipping app/helpers/barcode_labels_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.075761 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.079383 #1]  WARN -- : Skipping app/controllers/qc_files_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.079414 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.102824 #1]  WARN -- : Skipping app/controllers/concerns/work_completion_behaviour.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.102856 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.106690 #1]  WARN -- : Skipping app/controllers/concerns/sequencescape_submission_behaviour.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.106723 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.131435 #1]  WARN -- : Skipping app/controllers/pipeline_work_in_progress_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.131470 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.138374 #1]  WARN -- : Skipping app/controllers/search_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.138408 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.230210 #1]  WARN -- : Skipping app/controllers/labware_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.230259 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.278492 #1]  WARN -- : Skipping app/controllers/robots_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.278529 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.289547 #1]  WARN -- : Skipping app/sequencescape/sequencescape/api/v2.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.289586 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.457763 #1]  WARN -- : Skipping app/sequencescape/sequencescape/api/v2/shared/has_requests.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.457812 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.608660 #1]  WARN -- : Skipping lib/well_helpers.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.608694 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.629108 #1]  WARN -- : Skipping lib/robot_configuration.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.629140 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:18.639704 #1]  WARN -- : Skipping lib/purpose_config.rb due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:18.639737 #1]  WARN -- : Response status: 422
6
duplication
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12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
W, [2024-09-20T11:45:22.236583 #1]  WARN -- : Skipping app/frontend/javascript/shared/transfersLayouts.js due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:22.236642 #1]  WARN -- : Response status: 422
W, [2024-09-20T11:45:22.927053 #1]  WARN -- : Skipping app/frontend/javascript/multi-stamp/components/MultiStampLibrarySplitter.js due to CC::Parser::Client::HTTPError
W, [2024-09-20T11:45:22.927110 #1]  WARN -- : Response status: 422
I, [2024-09-20T11:45:23.281213 #1]  INFO -- : Skipping file ./app/models/ongoing_tube.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :states))

I, [2024-09-20T11:45:23.308984 #1]  INFO -- : Skipping file ./app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb due to exception (Racc::ParseError): ./app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb:8 :: parse error on value ")" (tRPAREN)

I, [2024-09-20T11:45:23.356112 #1]  INFO -- : Skipping file ./app/models/concerns/presenters/creation_behaviour.rb due to exception (Racc::ParseError): ./app/models/concerns/presenters/creation_behaviour.rb:29 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:23.365581 #1]  INFO -- : Skipping file ./app/models/concerns/presenters/extended_csv.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:lvar, :index))

I, [2024-09-20T11:45:23.419277 #1]  INFO -- : Skipping file ./app/models/concerns/labware_creators/tagged_plate_behaviour.rb due to exception (Racc::ParseError): ./app/models/concerns/labware_creators/tagged_plate_behaviour.rb:11 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:23.442198 #1]  INFO -- : Skipping file ./app/models/ongoing_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :states))

I, [2024-09-20T11:45:23.541278 #1]  INFO -- : Skipping file ./app/models/utility/pcr_cycles_csv_file_upload_config_base.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :input_amount_desired_min))

I, [2024-09-20T11:45:23.695417 #1]  INFO -- : Skipping file ./app/models/presenters/plate_presenter.rb due to exception (Racc::ParseError): ./app/models/presenters/plate_presenter.rb:39 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:23.788706 #1]  INFO -- : Skipping file ./app/models/labels/tube_label.rb due to exception (Racc::ParseError): ./app/models/labels/tube_label.rb:9 :: parse error on value ":" (tSYMBEG)

I, [2024-09-20T11:45:23.817191 #1]  INFO -- : Skipping file ./app/models/labels/tube_label_traction_compatible.rb due to exception (Racc::ParseError): ./app/models/labels/tube_label_traction_compatible.rb:30 :: parse error on value ":" (tSYMBEG)

I, [2024-09-20T11:45:23.904185 #1]  INFO -- : Skipping file ./app/models/state_changers.rb due to exception (Racc::ParseError): ./app/models/state_changers.rb:28 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:23.938126 #1]  INFO -- : Skipping file ./app/models/robots/bed/plate_to_tube_racks_bed.rb due to exception (Racc::ParseError): ./app/models/robots/bed/plate_to_tube_racks_bed.rb:20 :: parse error on value "," (tCOMMA)

I, [2024-09-20T11:45:24.045253 #1]  INFO -- : Skipping file ./app/models/labware_metadata.rb due to exception (Racc::ParseError): ./app/models/labware_metadata.rb:8 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:24.050969 #1]  INFO -- : Skipping file ./app/models/print_job.rb due to exception (Racc::ParseError): ./app/models/print_job.rb:10 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:24.102806 #1]  INFO -- : Skipping file ./app/models/limber/qc_file.rb due to exception (Racc::ParseError): ./app/models/limber/qc_file.rb:7 :: parse error on value ":" (tSYMBEG)

I, [2024-09-20T11:45:24.202337 #1]  INFO -- : Skipping file ./app/models/sequencescape_submission.rb due to exception (Racc::ParseError): ./app/models/sequencescape_submission.rb:39 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:24.264156 #1]  INFO -- : Skipping file ./app/models/labware_creators/final_tube.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :parents))

I, [2024-09-20T11:45:24.297753 #1]  INFO -- : Skipping file ./app/models/labware_creators/pcr_cycles_binned_plate/csv_file_base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pcr_cycles_binned_plate/csv_file_base.rb:18 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:24.467491 #1]  INFO -- : Skipping file ./app/models/labware_creators/tagged_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :tag_plate))

I, [2024-09-20T11:45:24.533935 #1]  INFO -- : Skipping file ./app/models/labware_creators/quadrant_split_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :uuid))

I, [2024-09-20T11:45:24.535300 #1]  INFO -- : Skipping file ./app/models/labware_creators/pooled_tubes_by_submission_with_phi_x.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pooled_tubes_by_submission_with_phi_x.rb:20 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:24.657615 #1]  INFO -- : Skipping file ./app/models/labware_creators/multi_stamp_tubes.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :transfers))

I, [2024-09-20T11:45:24.670003 #1]  INFO -- : Skipping file ./app/models/labware_creators/base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/base.rb:21 :: parse error on value "%i[" (error)

I, [2024-09-20T11:45:24.703328 #1]  INFO -- : Skipping file ./app/models/labware_creators/pooled_tubes_base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pooled_tubes_base.rb:26 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:24.717977 #1]  INFO -- : Skipping file ./app/models/labware_creators/multi_plate_pool.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :transfers))

I, [2024-09-20T11:45:24.784646 #1]  INFO -- : Skipping file ./app/models/labware_creators/custom_tagged_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :tag_plate))

I, [2024-09-20T11:45:24.897436 #1]  INFO -- : Skipping file ./app/models/labware_creators/plate_split_to_tube_racks.rb due to exception (Racc::ParseError): ./app/models/labware_creators/plate_split_to_tube_racks.rb:48 :: parse error on value "%i[" (error)

I, [2024-09-20T11:45:24.930070 #1]  INFO -- : Skipping file ./app/models/labware_creators/custom_pooled_tubes/csv_file.rb due to exception (Racc::ParseError): ./app/models/labware_creators/custom_pooled_tubes/csv_file.rb:12 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:24.964621 #1]  INFO -- : Skipping file ./app/models/labware_creators/quadrant_stamp_base.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :transfers))

I, [2024-09-20T11:45:24.972794 #1]  INFO -- : Skipping file ./app/models/labware_creators/pooled_tubes_by_sample.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pooled_tubes_by_sample.rb:20 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:25.021576 #1]  INFO -- : Skipping file ./app/models/labware_creators/final_tube_from_plate.rb due to exception (Racc::ParseError): ./app/models/labware_creators/final_tube_from_plate.rb:44 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:25.021652 #1]  INFO -- : Skipping file ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack.rb due to exception (Racc::ParseError): ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack.rb:54 :: parse error on value "]" (tRBRACK)

I, [2024-09-20T11:45:25.058095 #1]  INFO -- : Skipping file ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack_with_rack_barcode.rb due to exception (Racc::ParseError): ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack_with_rack_barcode.rb:31 :: parse error on value "]" (tRBRACK)

I, [2024-09-20T11:45:25.074438 #1]  INFO -- : Skipping file ./app/helpers/page_helper.rb due to exception (Racc::ParseError): ./app/helpers/page_helper.rb:5 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:25.087187 #1]  INFO -- : Skipping file ./app/helpers/plate_helper.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:lvar, :pool_id))

I, [2024-09-20T11:45:25.097989 #1]  INFO -- : Skipping file ./app/helpers/labware_helper.rb due to exception (Racc::ParseError): ./app/helpers/labware_helper.rb:5 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:25.108241 #1]  INFO -- : Skipping file ./app/helpers/application_helper.rb due to exception (Racc::ParseError): ./app/helpers/application_helper.rb:30 :: parse error on value ")" (tRPAREN)

I, [2024-09-20T11:45:25.144374 #1]  INFO -- : Skipping file ./app/helpers/barcode_labels_helper.rb due to exception (Racc::ParseError): ./app/helpers/barcode_labels_helper.rb:5 :: parse error on value ":" (tSYMBEG)

I, [2024-09-20T11:45:25.145231 #1]  INFO -- : Skipping file ./app/controllers/qc_files_controller.rb due to exception (Racc::ParseError): ./app/controllers/qc_files_controller.rb:11 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:25.191987 #1]  INFO -- : Skipping file ./app/controllers/concerns/work_completion_behaviour.rb due to exception (Racc::ParseError): ./app/controllers/concerns/work_completion_behaviour.rb:20 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:25.192044 #1]  INFO -- : Skipping file ./app/controllers/concerns/sequencescape_submission_behaviour.rb due to exception (Racc::ParseError): ./app/controllers/concerns/sequencescape_submission_behaviour.rb:23 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:25.306610 #1]  INFO -- : Skipping file ./app/controllers/pipeline_work_in_progress_controller.rb due to exception (Racc::ParseError): ./app/controllers/pipeline_work_in_progress_controller.rb:20 :: parse error on value "&." (error)

I, [2024-09-20T11:45:25.312651 #1]  INFO -- : Skipping file ./app/controllers/search_controller.rb due to exception (Racc::ParseError): ./app/controllers/search_controller.rb:8 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:25.422207 #1]  INFO -- : Skipping file ./app/controllers/labware_controller.rb due to exception (Racc::ParseError): ./app/controllers/labware_controller.rb:11 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:25.442417 #1]  INFO -- : Skipping file ./app/controllers/robots_controller.rb due to exception (Racc::ParseError): ./app/controllers/robots_controller.rb:14 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:25.474314 #1]  INFO -- : Skipping file ./app/sequencescape/sequencescape/api/v2.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :child_plates))

I, [2024-09-20T11:45:25.566343 #1]  INFO -- : Skipping file ./app/sequencescape/sequencescape/api/v2/shared/has_requests.rb due to exception (Racc::ParseError): ./app/sequencescape/sequencescape/api/v2/shared/has_requests.rb:44 :: parse error on value "&." (error)

I, [2024-09-20T11:45:25.661647 #1]  INFO -- : Skipping file ./lib/well_helpers.rb due to exception (Racc::ParseError): ./lib/well_helpers.rb:9 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:25.704614 #1]  INFO -- : Skipping file ./lib/robot_configuration.rb due to exception (Racc::ParseError): ./lib/robot_configuration.rb:9 :: parse error on value ":" (tCOLON)

I, [2024-09-20T11:45:25.720380 #1]  INFO -- : Skipping file ./lib/purpose_config.rb due to exception (Racc::ParseError): ./lib/purpose_config.rb:47 :: parse error on value ":" (tSYMBEG)