Build #3192 - sanger/limber

fix: remove use of strip which raises an exception on invalid chars #3192

Stephen Hulme authored aaabd572

complete00:01:47

1	git clone	00:00:01
2	codeclimate validate-config	00:00:01	View output
`codeclimate validate-config No errors or warnings found in .codeclimate.json.`
3	codeclimate prepare	00:00:02	View output
`codeclimate prepare`
4	builder pull-engines	00:01:21	View output
determining required images docker pull codeclimate/codeclimate-structure:b1673 b1673: Pulling from codeclimate/codeclimate-structure bff3e048017e: Pulling fs layer 339148ecceb7: Pulling fs layer 75031b9f2662: Pulling fs layer 23e4bece904f: Pulling fs layer 580694eb2ab1: Pulling fs layer 4220ab45da32: Pulling fs layer 3fec094de8af: Pulling fs layer 57311f690d79: Pulling fs layer 30eef54b06d3: Pulling fs layer 533e89ddc74f: Pulling fs layer b1fbd916a7fd: Pulling fs layer c04c8e3d3f1e: Pulling fs layer 6270755c49c6: Pulling fs layer 23e4bece904f: Waiting c152db51e160: Pulling fs layer 0ff11adca159: Pulling fs layer 57311f690d79: Waiting b04ea1c225fc: Pulling fs layer a5900fead2e7: Pulling fs layer 3fec094de8af: Waiting 4220ab45da32: Waiting 05e1fa67ae7b: Pulling fs layer 55efbe71dad7: Pulling fs layer 580694eb2ab1: Waiting fae57dc97efc: Pulling fs layer c9bb173ce1a5: Pulling fs layer ad7655ca63f7: Pulling fs layer 6270755c49c6: Waiting 533e89ddc74f: Waiting c302f0c4c32a: Pulling fs layer 2313612dd8ff: Pulling fs layer e256e1e3d8f9: Pulling fs layer 30eef54b06d3: Waiting b1fbd916a7fd: Waiting 4d0473eb5f61: Pulling fs layer 24f7364b1ed7: Pulling fs layer c04c8e3d3f1e: Waiting 55efbe71dad7: Waiting ad7655ca63f7: Waiting e2f78d056f14: Pulling fs layer c152db51e160: Waiting fae57dc97efc: Waiting ba793bb5beb0: Pulling fs layer 0ff11adca159: Waiting 9c6fe351d4a0: Pulling fs layer c9bb173ce1a5: Waiting 564e99fe143b: Pulling fs layer b04ea1c225fc: Waiting e256e1e3d8f9: Waiting d4d28bcef407: Pulling fs layer a5900fead2e7: Waiting 377ba0623335: Pulling fs layer c302f0c4c32a: Waiting 05e1fa67ae7b: Waiting 2313612dd8ff: Waiting da34fb180d01: Pulling fs layer ba793bb5beb0: Waiting e662a1397458: Pulling fs layer 564e99fe143b: Waiting 83257097193a: Pulling fs layer 4d0473eb5f61: Waiting 9c6fe351d4a0: Waiting 24f7364b1ed7: Waiting 377ba0623335: Waiting e2f78d056f14: Waiting 60ea3c49c796: Pulling fs layer d4d28bcef407: Waiting b3bd38aab0f6: Pulling fs layer 4de22538118e: Pulling fs layer da34fb180d01: Waiting 25cf34d42617: Pulling fs layer 83257097193a: Waiting 912ae8410047: Pulling fs layer e662a1397458: Waiting 9b6209b21f89: Pulling fs layer b3bd38aab0f6: Waiting 1edfdbef3d97: Pulling fs layer 60ea3c49c796: Waiting 88d893e5be7c: Pulling fs layer 126b08a94339: Pulling fs layer 8f4517454b55: Pulling fs layer 75d3b10e39b6: Pulling fs layer f4ee7bf85263: Pulling fs layer e91df39e5278: Pulling fs layer 6a82a42dca5c: Pulling fs layer 4429e2badffb: Pulling fs layer 97bbdb242e6f: Pulling fs layer 88d893e5be7c: Waiting 97bbdb242e6f: Waiting 4de22538118e: Waiting 126b08a94339: Waiting 25cf34d42617: Waiting 8f4517454b55: Waiting 912ae8410047: Waiting 75d3b10e39b6: Waiting 9b6209b21f89: Waiting f4ee7bf85263: Waiting 1edfdbef3d97: Waiting e91df39e5278: Waiting 6a82a42dca5c: Waiting 4429e2badffb: Waiting 339148ecceb7: Verifying Checksum 339148ecceb7: Download complete 75031b9f2662: Verifying Checksum 75031b9f2662: Download complete bff3e048017e: Download complete bff3e048017e: Pull complete 23e4bece904f: Verifying Checksum 23e4bece904f: Download complete 339148ecceb7: Pull complete 75031b9f2662: Pull complete 3fec094de8af: Verifying Checksum 3fec094de8af: Download complete 580694eb2ab1: Verifying Checksum 580694eb2ab1: Download complete 57311f690d79: Download complete 30eef54b06d3: Verifying Checksum 30eef54b06d3: Download complete 533e89ddc74f: Download complete c04c8e3d3f1e: Verifying Checksum c04c8e3d3f1e: Download complete 6270755c49c6: Verifying Checksum 6270755c49c6: Download complete c152db51e160: Verifying Checksum c152db51e160: Download complete 0ff11adca159: Download complete b04ea1c225fc: Verifying Checksum b04ea1c225fc: Download complete a5900fead2e7: Download complete 05e1fa67ae7b: Download complete 55efbe71dad7: Verifying Checksum 55efbe71dad7: Download complete fae57dc97efc: Verifying Checksum fae57dc97efc: Download complete c9bb173ce1a5: Download complete 23e4bece904f: Pull complete ad7655ca63f7: Verifying Checksum ad7655ca63f7: Download complete c302f0c4c32a: Verifying Checksum c302f0c4c32a: Download complete 2313612dd8ff: Verifying Checksum 2313612dd8ff: Download complete e256e1e3d8f9: Verifying Checksum e256e1e3d8f9: Download complete 4d0473eb5f61: Verifying Checksum 4d0473eb5f61: Download complete 24f7364b1ed7: Download complete b1fbd916a7fd: Verifying Checksum b1fbd916a7fd: Download complete 580694eb2ab1: Pull complete ba793bb5beb0: Download complete e2f78d056f14: Download complete 564e99fe143b: Verifying Checksum 564e99fe143b: Download complete d4d28bcef407: Verifying Checksum d4d28bcef407: Download complete 377ba0623335: Download complete da34fb180d01: Verifying Checksum da34fb180d01: Download complete e662a1397458: Download complete 9c6fe351d4a0: Download complete 60ea3c49c796: Download complete 83257097193a: Download complete 4de22538118e: Download complete 25cf34d42617: Download complete 912ae8410047: Download complete 9b6209b21f89: Verifying Checksum 9b6209b21f89: Download complete b3bd38aab0f6: Verifying Checksum b3bd38aab0f6: Download complete 1edfdbef3d97: Verifying Checksum 1edfdbef3d97: Download complete 88d893e5be7c: Download complete 126b08a94339: Download complete 8f4517454b55: Download complete 75d3b10e39b6: Verifying Checksum 75d3b10e39b6: Download complete f4ee7bf85263: Verifying Checksum f4ee7bf85263: Download complete e91df39e5278: Download complete 6a82a42dca5c: Verifying Checksum 6a82a42dca5c: Download complete 97bbdb242e6f: Download complete 4429e2badffb: Verifying Checksum 4429e2badffb: Download complete 4220ab45da32: Download complete 4220ab45da32: Pull complete 3fec094de8af: Pull complete 57311f690d79: Pull complete 30eef54b06d3: Pull complete 533e89ddc74f: Pull complete b1fbd916a7fd: Pull complete c04c8e3d3f1e: Pull complete 6270755c49c6: Pull complete c152db51e160: Pull complete 0ff11adca159: Pull complete b04ea1c225fc: Pull complete a5900fead2e7: Pull complete 05e1fa67ae7b: Pull complete 55efbe71dad7: Pull complete fae57dc97efc: Pull complete c9bb173ce1a5: Pull complete ad7655ca63f7: Pull complete c302f0c4c32a: Pull complete 2313612dd8ff: Pull complete e256e1e3d8f9: Pull complete 4d0473eb5f61: Pull complete 24f7364b1ed7: Pull complete e2f78d056f14: Pull complete ba793bb5beb0: Pull complete 9c6fe351d4a0: Pull complete 564e99fe143b: Pull complete d4d28bcef407: Pull complete 377ba0623335: Pull complete da34fb180d01: Pull complete e662a1397458: Pull complete 83257097193a: Pull complete 60ea3c49c796: Pull complete b3bd38aab0f6: Pull complete 4de22538118e: Pull complete 25cf34d42617: Pull complete 912ae8410047: Pull complete 9b6209b21f89: Pull complete 1edfdbef3d97: Pull complete 88d893e5be7c: Pull complete 126b08a94339: Pull complete 8f4517454b55: Pull complete 75d3b10e39b6: Pull complete f4ee7bf85263: Pull complete e91df39e5278: Pull complete 6a82a42dca5c: Pull complete 4429e2badffb: Pull complete 97bbdb242e6f: Pull complete Digest: sha256:7880f01608ed54b763671e045bd8a2e774b3ad2d41f674f0a7e2af2a1195fca5 Status: Downloaded newer image for registry.prod.codeclimate.net/codeclimate/codeclimate-structure:b1673 docker pull codeclimate/codeclimate-duplication:b1329 b1329: Pulling from codeclimate/codeclimate-duplication bff3e048017e: Already exists 339148ecceb7: Already exists 75031b9f2662: Already exists 23e4bece904f: Already exists 580694eb2ab1: Already exists 4220ab45da32: Already exists 3fec094de8af: Already exists 57311f690d79: Already exists 30eef54b06d3: Already exists 533e89ddc74f: Already exists b1fbd916a7fd: Already exists c04c8e3d3f1e: Already exists 6270755c49c6: Already exists c152db51e160: Already exists 0ff11adca159: Already exists b04ea1c225fc: Already exists a5900fead2e7: Already exists 05e1fa67ae7b: Already exists 55efbe71dad7: Already exists fae57dc97efc: Already exists c9bb173ce1a5: Already exists ad7655ca63f7: Already exists c302f0c4c32a: Already exists 2313612dd8ff: Already exists e256e1e3d8f9: Already exists 4d0473eb5f61: Already exists 24f7364b1ed7: Already exists e2f78d056f14: Already exists ba793bb5beb0: Already exists 9c6fe351d4a0: Already exists 564e99fe143b: Already exists d4d28bcef407: Already exists 377ba0623335: Already exists da34fb180d01: Already exists e662a1397458: Already exists 83257097193a: Already exists 60ea3c49c796: Already exists b3bd38aab0f6: Already exists 4de22538118e: Already exists 25cf34d42617: Already exists 912ae8410047: Already exists 9b6209b21f89: Already exists 1edfdbef3d97: Already exists 88d893e5be7c: Already exists 126b08a94339: Already exists 8f4517454b55: Already exists 75d3b10e39b6: Already exists f4ee7bf85263: Already exists 5bdda228a9bd: Pulling fs layer 537f66dfc79a: Pulling fs layer 7621b06003bb: Pulling fs layer e291ef4014ba: Pulling fs layer bd60c2073336: Pulling fs layer 64534cad8c58: Pulling fs layer b90a9e1afea5: Pulling fs layer e291ef4014ba: Waiting bd60c2073336: Waiting b90a9e1afea5: Waiting 64534cad8c58: Waiting 537f66dfc79a: Verifying Checksum 537f66dfc79a: Download complete 5bdda228a9bd: Download complete 7621b06003bb: Verifying Checksum 7621b06003bb: Download complete 5bdda228a9bd: Pull complete 537f66dfc79a: Pull complete 7621b06003bb: Pull complete e291ef4014ba: Download complete 64534cad8c58: Download complete e291ef4014ba: Pull complete bd60c2073336: Download complete b90a9e1afea5: Verifying Checksum b90a9e1afea5: Download complete bd60c2073336: Pull complete 64534cad8c58: Pull complete b90a9e1afea5: Pull complete Digest: sha256:08c94e28c0e5d2d83c4d56b338edbdb742d269db6facd9d6477b953dd95c4a14 Status: Image is up to date for registry.prod.codeclimate.net/codeclimate/codeclimate-duplication:b1329
5	structure	00:00:07	View output
12 Parser process id: 12 codeclimate-parser socket not present waiting 1s... W, [2024-09-20T12:25:52.144702 #1] WARN -- : Skipping app/frontend/javascript/shared/transfersLayouts.js due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:52.144738 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:52.668102 #1] WARN -- : Skipping app/frontend/javascript/multi-stamp/components/MultiStampLibrarySplitter.js due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:52.668204 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:53.579818 #1] WARN -- : Skipping app/models/ongoing_tube.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:53.579855 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:53.621444 #1] WARN -- : Skipping app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:53.621478 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:53.661404 #1] WARN -- : Skipping app/models/concerns/presenters/creation_behaviour.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:53.661432 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:53.669390 #1] WARN -- : Skipping app/models/concerns/presenters/extended_csv.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:53.669417 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:53.727461 #1] WARN -- : Skipping app/models/concerns/labware_creators/tagged_plate_behaviour.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:53.727488 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:53.760233 #1] WARN -- : Skipping app/models/ongoing_plate.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:53.760260 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:53.847803 #1] WARN -- : Skipping app/models/utility/pcr_cycles_csv_file_upload_config_base.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:53.847832 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:54.023332 #1] WARN -- : Skipping app/models/presenters/plate_presenter.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:54.023361 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:54.102352 #1] WARN -- : Skipping app/models/labels/tube_label.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:54.102387 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:54.150765 #1] WARN -- : Skipping app/models/labels/tube_label_traction_compatible.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:54.150803 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:54.245704 #1] WARN -- : Skipping app/models/state_changers.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:54.245741 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:54.269078 #1] WARN -- : Skipping app/models/robots/bed/plate_to_tube_racks_bed.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:54.269120 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:54.427388 #1] WARN -- : Skipping app/models/labware_metadata.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:54.427419 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:54.440005 #1] WARN -- : Skipping app/models/print_job.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:54.440040 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:54.515224 #1] WARN -- : Skipping app/models/limber/qc_file.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:54.515257 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:54.565495 #1] WARN -- : Skipping app/models/sequencescape_submission.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:54.565534 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:54.646842 #1] WARN -- : Skipping app/models/labware_creators/final_tube.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:54.646880 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:54.918199 #1] WARN -- : Skipping app/models/labware_creators/tagged_plate.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:54.918240 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:54.968288 #1] WARN -- : Skipping app/models/labware_creators/quadrant_split_plate.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:54.968325 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:54.978878 #1] WARN -- : Skipping app/models/labware_creators/pooled_tubes_by_submission_with_phi_x.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:54.978907 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.062455 #1] WARN -- : Skipping app/models/labware_creators/multi_stamp_tubes.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.062491 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.075007 #1] WARN -- : Skipping app/models/labware_creators/base.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.075035 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.082117 #1] WARN -- : Skipping app/models/labware_creators/pooled_tubes_base.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.082145 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.098199 #1] WARN -- : Skipping app/models/labware_creators/multi_plate_pool.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.098228 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.105188 #1] WARN -- : Skipping app/models/labware_creators/custom_tagged_plate.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.105226 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.197627 #1] WARN -- : Skipping app/models/labware_creators/plate_split_to_tube_racks.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.197658 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.273613 #1] WARN -- : Skipping app/models/labware_creators/quadrant_stamp_base.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.273641 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.326543 #1] WARN -- : Skipping app/models/labware_creators/pooled_tubes_by_sample.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.326576 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.377442 #1] WARN -- : Skipping app/models/labware_creators/final_tube_from_plate.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.377473 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.479330 #1] WARN -- : Skipping app/helpers/page_helper.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.479360 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.484025 #1] WARN -- : Skipping app/helpers/plate_helper.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.484054 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.485782 #1] WARN -- : Skipping app/helpers/labware_helper.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.485810 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.489156 #1] WARN -- : Skipping app/helpers/application_helper.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.489183 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.522747 #1] WARN -- : Skipping app/helpers/barcode_labels_helper.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.522782 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.526232 #1] WARN -- : Skipping app/controllers/qc_files_controller.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.526261 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.550813 #1] WARN -- : Skipping app/controllers/concerns/work_completion_behaviour.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.550841 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.554319 #1] WARN -- : Skipping app/controllers/concerns/sequencescape_submission_behaviour.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.554346 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.572444 #1] WARN -- : Skipping app/controllers/pipeline_work_in_progress_controller.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.572471 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.579359 #1] WARN -- : Skipping app/controllers/search_controller.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.579385 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.651313 #1] WARN -- : Skipping app/controllers/labware_controller.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.651347 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.695059 #1] WARN -- : Skipping app/controllers/robots_controller.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.695092 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.705495 #1] WARN -- : Skipping app/sequencescape/sequencescape/api/v2.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.705525 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:55.938422 #1] WARN -- : Skipping app/sequencescape/sequencescape/api/v2/shared/has_requests.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:55.938450 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:56.094274 #1] WARN -- : Skipping lib/well_helpers.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:56.094302 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:56.136259 #1] WARN -- : Skipping lib/robot_configuration.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:56.136285 #1] WARN -- : Response status: 422 W, [2024-09-20T12:25:56.145861 #1] WARN -- : Skipping lib/purpose_config.rb due to CC::Parser::Client::HTTPError W, [2024-09-20T12:25:56.145887 #1] WARN -- : Response status: 422
6	duplication	00:00:09	View output
12 Parser process id: 12 codeclimate-parser socket not present waiting 1s... W, [2024-09-20T12:26:02.537042 #1] WARN -- : Skipping app/frontend/javascript/shared/transfersLayouts.js due to CC::Parser::Client::HTTPError W, [2024-09-20T12:26:02.537286 #1] WARN -- : Response status: 422 W, [2024-09-20T12:26:03.230387 #1] WARN -- : Skipping app/frontend/javascript/multi-stamp/components/MultiStampLibrarySplitter.js due to CC::Parser::Client::HTTPError W, [2024-09-20T12:26:03.230493 #1] WARN -- : Response status: 422 I, [2024-09-20T12:26:03.584683 #1] INFO -- : Skipping file ./app/models/ongoing_tube.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :states)) I, [2024-09-20T12:26:03.613593 #1] INFO -- : Skipping file ./app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb due to exception (Racc::ParseError): ./app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb:8 :: parse error on value ")" (tRPAREN) I, [2024-09-20T12:26:03.655022 #1] INFO -- : Skipping file ./app/models/concerns/presenters/creation_behaviour.rb due to exception (Racc::ParseError): ./app/models/concerns/presenters/creation_behaviour.rb:29 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:03.664190 #1] INFO -- : Skipping file ./app/models/concerns/presenters/extended_csv.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:lvar, :index)) I, [2024-09-20T12:26:03.718096 #1] INFO -- : Skipping file ./app/models/concerns/labware_creators/tagged_plate_behaviour.rb due to exception (Racc::ParseError): ./app/models/concerns/labware_creators/tagged_plate_behaviour.rb:11 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:03.742458 #1] INFO -- : Skipping file ./app/models/ongoing_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :states)) I, [2024-09-20T12:26:03.824798 #1] INFO -- : Skipping file ./app/models/utility/pcr_cycles_csv_file_upload_config_base.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :input_amount_desired_min)) I, [2024-09-20T12:26:03.951326 #1] INFO -- : Skipping file ./app/models/presenters/plate_presenter.rb due to exception (Racc::ParseError): ./app/models/presenters/plate_presenter.rb:39 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:03.996120 #1] INFO -- : Skipping file ./app/models/labels/tube_label.rb due to exception (Racc::ParseError): ./app/models/labels/tube_label.rb:9 :: parse error on value ":" (tSYMBEG) I, [2024-09-20T12:26:04.019189 #1] INFO -- : Skipping file ./app/models/labels/tube_label_traction_compatible.rb due to exception (Racc::ParseError): ./app/models/labels/tube_label_traction_compatible.rb:30 :: parse error on value ":" (tSYMBEG) I, [2024-09-20T12:26:04.078228 #1] INFO -- : Skipping file ./app/models/state_changers.rb due to exception (Racc::ParseError): ./app/models/state_changers.rb:28 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:04.096150 #1] INFO -- : Skipping file ./app/models/robots/bed/plate_to_tube_racks_bed.rb due to exception (Racc::ParseError): ./app/models/robots/bed/plate_to_tube_racks_bed.rb:20 :: parse error on value "," (tCOMMA) I, [2024-09-20T12:26:04.180549 #1] INFO -- : Skipping file ./app/models/labware_metadata.rb due to exception (Racc::ParseError): ./app/models/labware_metadata.rb:8 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:04.189809 #1] INFO -- : Skipping file ./app/models/print_job.rb due to exception (Racc::ParseError): ./app/models/print_job.rb:10 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:04.231097 #1] INFO -- : Skipping file ./app/models/limber/qc_file.rb due to exception (Racc::ParseError): ./app/models/limber/qc_file.rb:7 :: parse error on value ":" (tSYMBEG) I, [2024-09-20T12:26:04.303818 #1] INFO -- : Skipping file ./app/models/sequencescape_submission.rb due to exception (Racc::ParseError): ./app/models/sequencescape_submission.rb:39 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:04.342202 #1] INFO -- : Skipping file ./app/models/labware_creators/final_tube.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :parents)) I, [2024-09-20T12:26:04.396378 #1] INFO -- : Skipping file ./app/models/labware_creators/pcr_cycles_binned_plate/csv_file_base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pcr_cycles_binned_plate/csv_file_base.rb:18 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:04.538496 #1] INFO -- : Skipping file ./app/models/labware_creators/tagged_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :tag_plate)) I, [2024-09-20T12:26:04.589451 #1] INFO -- : Skipping file ./app/models/labware_creators/quadrant_split_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :uuid)) I, [2024-09-20T12:26:04.597067 #1] INFO -- : Skipping file ./app/models/labware_creators/pooled_tubes_by_submission_with_phi_x.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pooled_tubes_by_submission_with_phi_x.rb:20 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:04.706284 #1] INFO -- : Skipping file ./app/models/labware_creators/multi_stamp_tubes.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :transfers)) I, [2024-09-20T12:26:04.712507 #1] INFO -- : Skipping file ./app/models/labware_creators/base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/base.rb:21 :: parse error on value "%i[" (error) I, [2024-09-20T12:26:04.735627 #1] INFO -- : Skipping file ./app/models/labware_creators/pooled_tubes_base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pooled_tubes_base.rb:26 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:04.741005 #1] INFO -- : Skipping file ./app/models/labware_creators/multi_plate_pool.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :transfers)) I, [2024-09-20T12:26:04.792976 #1] INFO -- : Skipping file ./app/models/labware_creators/custom_tagged_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :tag_plate)) I, [2024-09-20T12:26:04.886903 #1] INFO -- : Skipping file ./app/models/labware_creators/plate_split_to_tube_racks.rb due to exception (Racc::ParseError): ./app/models/labware_creators/plate_split_to_tube_racks.rb:48 :: parse error on value "%i[" (error) I, [2024-09-20T12:26:04.919530 #1] INFO -- : Skipping file ./app/models/labware_creators/custom_pooled_tubes/csv_file.rb due to exception (Racc::ParseError): ./app/models/labware_creators/custom_pooled_tubes/csv_file.rb:12 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:04.943438 #1] INFO -- : Skipping file ./app/models/labware_creators/quadrant_stamp_base.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :transfers)) I, [2024-09-20T12:26:04.957375 #1] INFO -- : Skipping file ./app/models/labware_creators/pooled_tubes_by_sample.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pooled_tubes_by_sample.rb:20 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:04.999042 #1] INFO -- : Skipping file ./app/models/labware_creators/final_tube_from_plate.rb due to exception (Racc::ParseError): ./app/models/labware_creators/final_tube_from_plate.rb:44 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:05.003014 #1] INFO -- : Skipping file ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack.rb due to exception (Racc::ParseError): ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack.rb:54 :: parse error on value "]" (tRBRACK) I, [2024-09-20T12:26:05.031790 #1] INFO -- : Skipping file ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack_with_rack_barcode.rb due to exception (Racc::ParseError): ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack_with_rack_barcode.rb:31 :: parse error on value "]" (tRBRACK) I, [2024-09-20T12:26:05.044853 #1] INFO -- : Skipping file ./app/helpers/page_helper.rb due to exception (Racc::ParseError): ./app/helpers/page_helper.rb:5 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:05.057542 #1] INFO -- : Skipping file ./app/helpers/plate_helper.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:lvar, :pool_id)) I, [2024-09-20T12:26:05.067483 #1] INFO -- : Skipping file ./app/helpers/labware_helper.rb due to exception (Racc::ParseError): ./app/helpers/labware_helper.rb:5 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:05.082670 #1] INFO -- : Skipping file ./app/helpers/application_helper.rb due to exception (Racc::ParseError): ./app/helpers/application_helper.rb:30 :: parse error on value ")" (tRPAREN) I, [2024-09-20T12:26:05.111290 #1] INFO -- : Skipping file ./app/helpers/barcode_labels_helper.rb due to exception (Racc::ParseError): ./app/helpers/barcode_labels_helper.rb:5 :: parse error on value ":" (tSYMBEG) I, [2024-09-20T12:26:05.111350 #1] INFO -- : Skipping file ./app/controllers/qc_files_controller.rb due to exception (Racc::ParseError): ./app/controllers/qc_files_controller.rb:11 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:05.155461 #1] INFO -- : Skipping file ./app/controllers/concerns/work_completion_behaviour.rb due to exception (Racc::ParseError): ./app/controllers/concerns/work_completion_behaviour.rb:20 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:05.157268 #1] INFO -- : Skipping file ./app/controllers/concerns/sequencescape_submission_behaviour.rb due to exception (Racc::ParseError): ./app/controllers/concerns/sequencescape_submission_behaviour.rb:23 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:05.253779 #1] INFO -- : Skipping file ./app/controllers/pipeline_work_in_progress_controller.rb due to exception (Racc::ParseError): ./app/controllers/pipeline_work_in_progress_controller.rb:20 :: parse error on value "&." (error) I, [2024-09-20T12:26:05.254535 #1] INFO -- : Skipping file ./app/controllers/search_controller.rb due to exception (Racc::ParseError): ./app/controllers/search_controller.rb:8 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:05.353068 #1] INFO -- : Skipping file ./app/controllers/labware_controller.rb due to exception (Racc::ParseError): ./app/controllers/labware_controller.rb:11 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:05.381066 #1] INFO -- : Skipping file ./app/controllers/robots_controller.rb due to exception (Racc::ParseError): ./app/controllers/robots_controller.rb:14 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:05.407940 #1] INFO -- : Skipping file ./app/sequencescape/sequencescape/api/v2.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :child_plates)) I, [2024-09-20T12:26:05.500625 #1] INFO -- : Skipping file ./app/sequencescape/sequencescape/api/v2/shared/has_requests.rb due to exception (Racc::ParseError): ./app/sequencescape/sequencescape/api/v2/shared/has_requests.rb:44 :: parse error on value "&." (error) I, [2024-09-20T12:26:05.617732 #1] INFO -- : Skipping file ./lib/well_helpers.rb due to exception (Racc::ParseError): ./lib/well_helpers.rb:9 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:05.647786 #1] INFO -- : Skipping file ./lib/robot_configuration.rb due to exception (Racc::ParseError): ./lib/robot_configuration.rb:9 :: parse error on value ":" (tCOLON) I, [2024-09-20T12:26:05.662545 #1] INFO -- : Skipping file ./lib/purpose_config.rb due to exception (Racc::ParseError): ./lib/purpose_config.rb:47 :: parse error on value ":" (tSYMBEG)