sanger/limber

View on GitHub
build: add note on dependency origins #3247
Stephen Hulme authored 4081cba4
complete00:00:31
1
git clone
2
codeclimate validate-config
View output
codeclimate validate-config
No errors or warnings found in .codeclimate.json.
3
codeclimate prepare
View output
codeclimate prepare
4
builder pull-engines
View output
determining required images
5
structure
View output
12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
W, [2024-09-25T13:16:26.192940 #1]  WARN -- : Skipping app/frontend/javascript/shared/transfersLayouts.js due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:26.192983 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:26.725339 #1]  WARN -- : Skipping app/frontend/javascript/multi-stamp/components/MultiStampLibrarySplitter.js due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:26.725462 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:27.702411 #1]  WARN -- : Skipping app/models/ongoing_tube.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:27.702503 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:27.766648 #1]  WARN -- : Skipping app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:27.766678 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:27.834246 #1]  WARN -- : Skipping app/models/concerns/presenters/creation_behaviour.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:27.834285 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:27.845353 #1]  WARN -- : Skipping app/models/concerns/presenters/extended_csv.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:27.845391 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:27.933233 #1]  WARN -- : Skipping app/models/concerns/labware_creators/tagged_plate_behaviour.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:27.933269 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:27.976039 #1]  WARN -- : Skipping app/models/ongoing_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:27.976082 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:28.116465 #1]  WARN -- : Skipping app/models/utility/pcr_cycles_csv_file_upload_config_base.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:28.116511 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:28.368902 #1]  WARN -- : Skipping app/models/presenters/plate_presenter.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:28.368936 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:28.441544 #1]  WARN -- : Skipping app/models/labels/tube_label.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:28.441574 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:28.491976 #1]  WARN -- : Skipping app/models/labels/tube_label_traction_compatible.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:28.492012 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:28.575714 #1]  WARN -- : Skipping app/models/state_changers.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:28.575749 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:28.601806 #1]  WARN -- : Skipping app/models/robots/bed/plate_to_tube_racks_bed.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:28.601841 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:28.782177 #1]  WARN -- : Skipping app/models/labware_metadata.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:28.782208 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:28.799418 #1]  WARN -- : Skipping app/models/print_job.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:28.799446 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:28.887513 #1]  WARN -- : Skipping app/models/limber/qc_file.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:28.887555 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:28.946097 #1]  WARN -- : Skipping app/models/sequencescape_submission.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:28.946126 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.013853 #1]  WARN -- : Skipping app/models/labware_creators/final_tube.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.013889 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.309286 #1]  WARN -- : Skipping app/models/labware_creators/tagged_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.309314 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.370047 #1]  WARN -- : Skipping app/models/labware_creators/quadrant_split_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.370079 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.384929 #1]  WARN -- : Skipping app/models/labware_creators/pooled_tubes_by_submission_with_phi_x.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.384958 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.445681 #1]  WARN -- : Skipping app/models/labware_creators/multi_stamp_tubes.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.445719 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.456194 #1]  WARN -- : Skipping app/models/labware_creators/base.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.456220 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.463195 #1]  WARN -- : Skipping app/models/labware_creators/pooled_tubes_base.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.463223 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.474642 #1]  WARN -- : Skipping app/models/labware_creators/multi_plate_pool.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.474680 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.480698 #1]  WARN -- : Skipping app/models/labware_creators/custom_tagged_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.480739 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.571460 #1]  WARN -- : Skipping app/models/labware_creators/plate_split_to_tube_racks.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.571499 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.654463 #1]  WARN -- : Skipping app/models/labware_creators/quadrant_stamp_base.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.654492 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.658461 #1]  WARN -- : Skipping app/models/labware_creators/pooled_tubes_by_sample.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.658488 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.712467 #1]  WARN -- : Skipping app/models/labware_creators/final_tube_from_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.712497 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.822099 #1]  WARN -- : Skipping app/helpers/page_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.822136 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.827623 #1]  WARN -- : Skipping app/helpers/plate_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.827694 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.832572 #1]  WARN -- : Skipping app/helpers/labware_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.832609 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.836948 #1]  WARN -- : Skipping app/helpers/application_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.836979 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.879312 #1]  WARN -- : Skipping app/helpers/barcode_labels_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.879346 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.883412 #1]  WARN -- : Skipping app/controllers/qc_files_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.883448 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.910505 #1]  WARN -- : Skipping app/controllers/concerns/work_completion_behaviour.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.910545 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.913490 #1]  WARN -- : Skipping app/controllers/concerns/sequencescape_submission_behaviour.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.913523 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.934813 #1]  WARN -- : Skipping app/controllers/pipeline_work_in_progress_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.934933 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:29.944665 #1]  WARN -- : Skipping app/controllers/search_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:29.944699 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:30.027390 #1]  WARN -- : Skipping app/controllers/labware_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:30.027424 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:30.080804 #1]  WARN -- : Skipping app/controllers/robots_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:30.080849 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:30.090533 #1]  WARN -- : Skipping app/sequencescape/sequencescape/api/v2.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:30.090566 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:30.297158 #1]  WARN -- : Skipping app/sequencescape/sequencescape/api/v2/shared/has_requests.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:30.297205 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:30.461444 #1]  WARN -- : Skipping lib/well_helpers.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:30.461473 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:30.480128 #1]  WARN -- : Skipping lib/robot_configuration.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:30.480154 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:30.490076 #1]  WARN -- : Skipping lib/purpose_config.rb due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:30.490103 #1]  WARN -- : Response status: 422
6
duplication
View output
12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
W, [2024-09-25T13:16:34.070392 #1]  WARN -- : Skipping app/frontend/javascript/shared/transfersLayouts.js due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:34.071535 #1]  WARN -- : Response status: 422
W, [2024-09-25T13:16:34.816169 #1]  WARN -- : Skipping app/frontend/javascript/multi-stamp/components/MultiStampLibrarySplitter.js due to CC::Parser::Client::HTTPError
W, [2024-09-25T13:16:34.816279 #1]  WARN -- : Response status: 422
I, [2024-09-25T13:16:35.310809 #1]  INFO -- : Skipping file ./app/models/ongoing_tube.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :states))

I, [2024-09-25T13:16:35.356166 #1]  INFO -- : Skipping file ./app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb due to exception (Racc::ParseError): ./app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb:8 :: parse error on value ")" (tRPAREN)

I, [2024-09-25T13:16:35.408249 #1]  INFO -- : Skipping file ./app/models/concerns/presenters/creation_behaviour.rb due to exception (Racc::ParseError): ./app/models/concerns/presenters/creation_behaviour.rb:29 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:35.418467 #1]  INFO -- : Skipping file ./app/models/concerns/presenters/extended_csv.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:lvar, :index))

I, [2024-09-25T13:16:35.493993 #1]  INFO -- : Skipping file ./app/models/concerns/labware_creators/tagged_plate_behaviour.rb due to exception (Racc::ParseError): ./app/models/concerns/labware_creators/tagged_plate_behaviour.rb:11 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:35.506507 #1]  INFO -- : Skipping file ./app/models/ongoing_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :states))

I, [2024-09-25T13:16:35.612735 #1]  INFO -- : Skipping file ./app/models/utility/pcr_cycles_csv_file_upload_config_base.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :input_amount_desired_min))

I, [2024-09-25T13:16:35.841060 #1]  INFO -- : Skipping file ./app/models/presenters/plate_presenter.rb due to exception (Racc::ParseError): ./app/models/presenters/plate_presenter.rb:39 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:35.879683 #1]  INFO -- : Skipping file ./app/models/labels/tube_label.rb due to exception (Racc::ParseError): ./app/models/labels/tube_label.rb:9 :: parse error on value ":" (tSYMBEG)

I, [2024-09-25T13:16:35.902898 #1]  INFO -- : Skipping file ./app/models/labels/tube_label_traction_compatible.rb due to exception (Racc::ParseError): ./app/models/labels/tube_label_traction_compatible.rb:30 :: parse error on value ":" (tSYMBEG)

I, [2024-09-25T13:16:35.969581 #1]  INFO -- : Skipping file ./app/models/state_changers.rb due to exception (Racc::ParseError): ./app/models/state_changers.rb:28 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:35.994008 #1]  INFO -- : Skipping file ./app/models/robots/bed/plate_to_tube_racks_bed.rb due to exception (Racc::ParseError): ./app/models/robots/bed/plate_to_tube_racks_bed.rb:20 :: parse error on value "," (tCOMMA)

I, [2024-09-25T13:16:36.116585 #1]  INFO -- : Skipping file ./app/models/labware_metadata.rb due to exception (Racc::ParseError): ./app/models/labware_metadata.rb:8 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:36.120512 #1]  INFO -- : Skipping file ./app/models/print_job.rb due to exception (Racc::ParseError): ./app/models/print_job.rb:10 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:36.183258 #1]  INFO -- : Skipping file ./app/models/limber/qc_file.rb due to exception (Racc::ParseError): ./app/models/limber/qc_file.rb:7 :: parse error on value ":" (tSYMBEG)

I, [2024-09-25T13:16:36.284271 #1]  INFO -- : Skipping file ./app/models/sequencescape_submission.rb due to exception (Racc::ParseError): ./app/models/sequencescape_submission.rb:39 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:36.330042 #1]  INFO -- : Skipping file ./app/models/labware_creators/final_tube.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :parents))

I, [2024-09-25T13:16:36.389148 #1]  INFO -- : Skipping file ./app/models/labware_creators/pcr_cycles_binned_plate/csv_file_base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pcr_cycles_binned_plate/csv_file_base.rb:18 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:36.565007 #1]  INFO -- : Skipping file ./app/models/labware_creators/tagged_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :tag_plate))

I, [2024-09-25T13:16:36.641789 #1]  INFO -- : Skipping file ./app/models/labware_creators/quadrant_split_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :uuid))

I, [2024-09-25T13:16:36.647706 #1]  INFO -- : Skipping file ./app/models/labware_creators/pooled_tubes_by_submission_with_phi_x.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pooled_tubes_by_submission_with_phi_x.rb:20 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:36.807090 #1]  INFO -- : Skipping file ./app/models/labware_creators/multi_stamp_tubes.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :transfers))

I, [2024-09-25T13:16:36.820445 #1]  INFO -- : Skipping file ./app/models/labware_creators/base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/base.rb:21 :: parse error on value "%i[" (error)

I, [2024-09-25T13:16:36.849854 #1]  INFO -- : Skipping file ./app/models/labware_creators/pooled_tubes_base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pooled_tubes_base.rb:26 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:36.858961 #1]  INFO -- : Skipping file ./app/models/labware_creators/multi_plate_pool.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :transfers))

I, [2024-09-25T13:16:36.932476 #1]  INFO -- : Skipping file ./app/models/labware_creators/custom_tagged_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :tag_plate))

I, [2024-09-25T13:16:37.055566 #1]  INFO -- : Skipping file ./app/models/labware_creators/plate_split_to_tube_racks.rb due to exception (Racc::ParseError): ./app/models/labware_creators/plate_split_to_tube_racks.rb:48 :: parse error on value "%i[" (error)

I, [2024-09-25T13:16:37.084281 #1]  INFO -- : Skipping file ./app/models/labware_creators/custom_pooled_tubes/csv_file.rb due to exception (Racc::ParseError): ./app/models/labware_creators/custom_pooled_tubes/csv_file.rb:12 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:37.112467 #1]  INFO -- : Skipping file ./app/models/labware_creators/quadrant_stamp_base.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :transfers))

I, [2024-09-25T13:16:37.137473 #1]  INFO -- : Skipping file ./app/models/labware_creators/pooled_tubes_by_sample.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pooled_tubes_by_sample.rb:20 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:37.209995 #1]  INFO -- : Skipping file ./app/models/labware_creators/final_tube_from_plate.rb due to exception (Racc::ParseError): ./app/models/labware_creators/final_tube_from_plate.rb:44 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:37.223486 #1]  INFO -- : Skipping file ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack.rb due to exception (Racc::ParseError): ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack.rb:54 :: parse error on value "]" (tRBRACK)

I, [2024-09-25T13:16:37.261551 #1]  INFO -- : Skipping file ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack_with_rack_barcode.rb due to exception (Racc::ParseError): ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack_with_rack_barcode.rb:31 :: parse error on value "]" (tRBRACK)

I, [2024-09-25T13:16:37.275486 #1]  INFO -- : Skipping file ./app/helpers/page_helper.rb due to exception (Racc::ParseError): ./app/helpers/page_helper.rb:5 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:37.293347 #1]  INFO -- : Skipping file ./app/helpers/plate_helper.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:lvar, :pool_id))

I, [2024-09-25T13:16:37.302368 #1]  INFO -- : Skipping file ./app/helpers/labware_helper.rb due to exception (Racc::ParseError): ./app/helpers/labware_helper.rb:5 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:37.323058 #1]  INFO -- : Skipping file ./app/helpers/application_helper.rb due to exception (Racc::ParseError): ./app/helpers/application_helper.rb:30 :: parse error on value ")" (tRPAREN)

I, [2024-09-25T13:16:37.362511 #1]  INFO -- : Skipping file ./app/helpers/barcode_labels_helper.rb due to exception (Racc::ParseError): ./app/helpers/barcode_labels_helper.rb:5 :: parse error on value ":" (tSYMBEG)

I, [2024-09-25T13:16:37.362572 #1]  INFO -- : Skipping file ./app/controllers/qc_files_controller.rb due to exception (Racc::ParseError): ./app/controllers/qc_files_controller.rb:11 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:37.431602 #1]  INFO -- : Skipping file ./app/controllers/concerns/work_completion_behaviour.rb due to exception (Racc::ParseError): ./app/controllers/concerns/work_completion_behaviour.rb:20 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:37.431743 #1]  INFO -- : Skipping file ./app/controllers/concerns/sequencescape_submission_behaviour.rb due to exception (Racc::ParseError): ./app/controllers/concerns/sequencescape_submission_behaviour.rb:23 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:37.580735 #1]  INFO -- : Skipping file ./app/controllers/pipeline_work_in_progress_controller.rb due to exception (Racc::ParseError): ./app/controllers/pipeline_work_in_progress_controller.rb:20 :: parse error on value "&." (error)

I, [2024-09-25T13:16:37.599305 #1]  INFO -- : Skipping file ./app/controllers/search_controller.rb due to exception (Racc::ParseError): ./app/controllers/search_controller.rb:8 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:37.722386 #1]  INFO -- : Skipping file ./app/controllers/labware_controller.rb due to exception (Racc::ParseError): ./app/controllers/labware_controller.rb:11 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:37.761224 #1]  INFO -- : Skipping file ./app/controllers/robots_controller.rb due to exception (Racc::ParseError): ./app/controllers/robots_controller.rb:14 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:37.816406 #1]  INFO -- : Skipping file ./app/sequencescape/sequencescape/api/v2.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :child_plates))

I, [2024-09-25T13:16:37.931510 #1]  INFO -- : Skipping file ./app/sequencescape/sequencescape/api/v2/shared/has_requests.rb due to exception (Racc::ParseError): ./app/sequencescape/sequencescape/api/v2/shared/has_requests.rb:44 :: parse error on value "&." (error)

I, [2024-09-25T13:16:38.072439 #1]  INFO -- : Skipping file ./lib/well_helpers.rb due to exception (Racc::ParseError): ./lib/well_helpers.rb:9 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:38.094762 #1]  INFO -- : Skipping file ./lib/robot_configuration.rb due to exception (Racc::ParseError): ./lib/robot_configuration.rb:9 :: parse error on value ":" (tCOLON)

I, [2024-09-25T13:16:38.118696 #1]  INFO -- : Skipping file ./lib/purpose_config.rb due to exception (Racc::ParseError): ./lib/purpose_config.rb:47 :: parse error on value ":" (tSYMBEG)