sanger/limber

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Update all of rails to version 7.2.1.2 #3383
depfu[bot] authored 872ecd60
complete00:00:21
1
git clone
2
codeclimate validate-config
View output
codeclimate validate-config
No errors or warnings found in .codeclimate.json.
3
codeclimate prepare
View output
codeclimate prepare
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builder pull-engines
View output
determining required images
5
structure
View output
12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
W, [2024-10-25T01:25:54.761009 #1]  WARN -- : Skipping app/frontend/javascript/shared/transfersLayouts.js due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:54.761045 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:55.147466 #1]  WARN -- : Skipping app/frontend/javascript/multi-stamp/components/MultiStampLibrarySplitter.js due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:55.147505 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:56.105003 #1]  WARN -- : Skipping app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:56.105035 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:56.164682 #1]  WARN -- : Skipping app/models/concerns/presenters/extended_csv.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:56.164717 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:56.359186 #1]  WARN -- : Skipping app/models/utility/pcr_cycles_csv_file_upload_config_base.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:56.359218 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:56.566069 #1]  WARN -- : Skipping app/models/presenters/plate_presenter.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:56.566101 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:56.959795 #1]  WARN -- : Skipping app/models/labware_metadata.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:56.959823 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:57.106892 #1]  WARN -- : Skipping app/models/sequencescape_submission.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:57.106922 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:57.178326 #1]  WARN -- : Skipping app/models/labware_creators/final_tube.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:57.178355 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:57.421246 #1]  WARN -- : Skipping app/models/labware_creators/tagged_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:57.421279 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:57.463898 #1]  WARN -- : Skipping app/models/labware_creators/quadrant_split_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:57.463937 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:57.574434 #1]  WARN -- : Skipping app/models/labware_creators/base.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:57.574468 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:57.618931 #1]  WARN -- : Skipping app/models/labware_creators/custom_tagged_plate.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:57.618966 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:57.702189 #1]  WARN -- : Skipping app/models/labware_creators/plate_split_to_tube_racks.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:57.702227 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:57.784457 #1]  WARN -- : Skipping app/models/labware_creators/quadrant_stamp_base.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:57.784486 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:57.793769 #1]  WARN -- : Skipping app/models/labware_creators/pooled_tubes_by_sample.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:57.793799 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:57.899787 #1]  WARN -- : Skipping app/helpers/page_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:57.899815 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:57.909106 #1]  WARN -- : Skipping app/helpers/labware_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:57.909134 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:57.912045 #1]  WARN -- : Skipping app/helpers/application_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:57.912070 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:57.937646 #1]  WARN -- : Skipping app/helpers/barcode_labels_helper.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:57.937678 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:58.012331 #1]  WARN -- : Skipping app/controllers/search_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:58.012365 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:58.077793 #1]  WARN -- : Skipping app/controllers/labware_controller.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:58.077825 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:58.160409 #1]  WARN -- : Skipping app/sequencescape/sequencescape/api/v2.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:58.160443 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:58.321002 #1]  WARN -- : Skipping app/sequencescape/sequencescape/api/v2/shared/has_requests.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:58.321039 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:58.454973 #1]  WARN -- : Skipping lib/well_helpers.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:58.455007 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:25:58.475733 #1]  WARN -- : Skipping lib/robot_configuration.rb due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:25:58.475760 #1]  WARN -- : Response status: 422
6
duplication
View output
12
Parser process id: 12
codeclimate-parser socket not present
waiting 1s...
W, [2024-10-25T01:26:01.954255 #1]  WARN -- : Skipping app/frontend/javascript/shared/transfersLayouts.js due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:26:01.954317 #1]  WARN -- : Response status: 422
W, [2024-10-25T01:26:02.519496 #1]  WARN -- : Skipping app/frontend/javascript/multi-stamp/components/MultiStampLibrarySplitter.js due to CC::Parser::Client::HTTPError
W, [2024-10-25T01:26:02.519628 #1]  WARN -- : Response status: 422
I, [2024-10-25T01:26:02.892723 #1]  INFO -- : Skipping file ./app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb due to exception (Racc::ParseError): ./app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb:8 :: parse error on value ")" (tRPAREN)

I, [2024-10-25T01:26:02.963566 #1]  INFO -- : Skipping file ./app/models/concerns/presenters/extended_csv.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:lvar, :index))

I, [2024-10-25T01:26:03.097093 #1]  INFO -- : Skipping file ./app/models/utility/pcr_cycles_csv_file_upload_config_base.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :input_amount_desired_min))

I, [2024-10-25T01:26:03.222705 #1]  INFO -- : Skipping file ./app/models/presenters/plate_presenter.rb due to exception (Racc::ParseError): ./app/models/presenters/plate_presenter.rb:39 :: parse error on value ":" (tCOLON)

I, [2024-10-25T01:26:03.288185 #1]  INFO -- : Skipping file ./app/models/labels/tube_label.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :first_line))

I, [2024-10-25T01:26:03.467041 #1]  INFO -- : Skipping file ./app/models/labware_metadata.rb due to exception (Racc::ParseError): ./app/models/labware_metadata.rb:8 :: parse error on value ":" (tCOLON)

I, [2024-10-25T01:26:03.592730 #1]  INFO -- : Skipping file ./app/models/sequencescape_submission.rb due to exception (Racc::ParseError): ./app/models/sequencescape_submission.rb:39 :: parse error on value ":" (tCOLON)

I, [2024-10-25T01:26:03.637064 #1]  INFO -- : Skipping file ./app/models/labware_creators/final_tube.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :parents))

I, [2024-10-25T01:26:03.691589 #1]  INFO -- : Skipping file ./app/models/labware_creators/pcr_cycles_binned_plate/csv_file_base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pcr_cycles_binned_plate/csv_file_base.rb:18 :: parse error on value ":" (tCOLON)

I, [2024-10-25T01:26:03.837917 #1]  INFO -- : Skipping file ./app/models/labware_creators/tagged_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :tag_plate))

I, [2024-10-25T01:26:03.899176 #1]  INFO -- : Skipping file ./app/models/labware_creators/quadrant_split_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :uuid))

I, [2024-10-25T01:26:03.965821 #1]  INFO -- : Skipping file ./app/models/labware_creators/base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/base.rb:21 :: parse error on value "%i[" (error)

I, [2024-10-25T01:26:04.023951 #1]  INFO -- : Skipping file ./app/models/labware_creators/custom_tagged_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :tag_plate))

I, [2024-10-25T01:26:04.121722 #1]  INFO -- : Skipping file ./app/models/labware_creators/plate_split_to_tube_racks.rb due to exception (Racc::ParseError): ./app/models/labware_creators/plate_split_to_tube_racks.rb:48 :: parse error on value "%i[" (error)

I, [2024-10-25T01:26:04.150223 #1]  INFO -- : Skipping file ./app/models/labware_creators/custom_pooled_tubes/csv_file.rb due to exception (Racc::ParseError): ./app/models/labware_creators/custom_pooled_tubes/csv_file.rb:12 :: parse error on value ":" (tCOLON)

I, [2024-10-25T01:26:04.243980 #1]  INFO -- : Skipping file ./app/models/labware_creators/quadrant_stamp_base.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :transfers))

I, [2024-10-25T01:26:04.262903 #1]  INFO -- : Skipping file ./app/models/labware_creators/pooled_tubes_by_sample.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pooled_tubes_by_sample.rb:20 :: parse error on value ":" (tCOLON)

I, [2024-10-25T01:26:04.307894 #1]  INFO -- : Skipping file ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack.rb due to exception (Racc::ParseError): ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack.rb:54 :: parse error on value "]" (tRBRACK)

I, [2024-10-25T01:26:04.323241 #1]  INFO -- : Skipping file ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack_with_rack_barcode.rb due to exception (Racc::ParseError): ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack_with_rack_barcode.rb:31 :: parse error on value "]" (tRBRACK)

I, [2024-10-25T01:26:04.334547 #1]  INFO -- : Skipping file ./app/helpers/page_helper.rb due to exception (Racc::ParseError): ./app/helpers/page_helper.rb:5 :: parse error on value ":" (tCOLON)

I, [2024-10-25T01:26:04.344777 #1]  INFO -- : Skipping file ./app/helpers/labware_helper.rb due to exception (Racc::ParseError): ./app/helpers/labware_helper.rb:5 :: parse error on value ":" (tCOLON)

I, [2024-10-25T01:26:04.358771 #1]  INFO -- : Skipping file ./app/helpers/application_helper.rb due to exception (Racc::ParseError): ./app/helpers/application_helper.rb:30 :: parse error on value ")" (tRPAREN)

I, [2024-10-25T01:26:04.386459 #1]  INFO -- : Skipping file ./app/helpers/barcode_labels_helper.rb due to exception (Racc::ParseError): ./app/helpers/barcode_labels_helper.rb:5 :: parse error on value ":" (tSYMBEG)

I, [2024-10-25T01:26:04.479361 #1]  INFO -- : Skipping file ./app/controllers/search_controller.rb due to exception (Racc::ParseError): ./app/controllers/search_controller.rb:8 :: parse error on value ":" (tCOLON)

I, [2024-10-25T01:26:04.568446 #1]  INFO -- : Skipping file ./app/controllers/labware_controller.rb due to exception (Racc::ParseError): ./app/controllers/labware_controller.rb:11 :: parse error on value ":" (tCOLON)

I, [2024-10-25T01:26:04.583265 #1]  INFO -- : Skipping file ./app/controllers/robots_controller.rb due to exception (Racc::ParseError): ./app/controllers/robots_controller.rb:14 :: parse error on value ":" (tCOLON)

I, [2024-10-25T01:26:04.620467 #1]  INFO -- : Skipping file ./app/sequencescape/sequencescape/api/v2.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :child_plates))

I, [2024-10-25T01:26:04.688234 #1]  INFO -- : Skipping file ./app/sequencescape/sequencescape/api/v2/shared/has_requests.rb due to exception (Racc::ParseError): ./app/sequencescape/sequencescape/api/v2/shared/has_requests.rb:44 :: parse error on value "&." (error)

I, [2024-10-25T01:26:04.774355 #1]  INFO -- : Skipping file ./lib/well_helpers.rb due to exception (Racc::ParseError): ./lib/well_helpers.rb:9 :: parse error on value ":" (tCOLON)

I, [2024-10-25T01:26:04.812409 #1]  INFO -- : Skipping file ./lib/robot_configuration.rb due to exception (Racc::ParseError): ./lib/robot_configuration.rb:9 :: parse error on value ":" (tCOLON)