Build #3406 - sanger/limber

Merge pull request #2030 from sanger/y24-014-re-isc-for-rvi #3406

Ben Topping authored 0cb8367b

complete00:00:22

1	git clone	00:00:01
2	codeclimate validate-config	00:00:01	View output
`codeclimate validate-config No errors or warnings found in .codeclimate.json.`
3	codeclimate prepare	00:00:01	View output
`codeclimate prepare`
4	builder pull-engines	00:00:00	View output
`determining required images`
5	structure	00:00:07	View output
12 Parser process id: 12 codeclimate-parser socket not present waiting 1s... W, [2024-10-31T10:43:47.029003 #1] WARN -- : Skipping app/frontend/javascript/shared/transfersLayouts.js due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:47.029039 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:47.468874 #1] WARN -- : Skipping app/frontend/javascript/multi-stamp/components/MultiStampLibrarySplitter.js due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:47.468913 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:48.446354 #1] WARN -- : Skipping app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:48.446396 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:48.513557 #1] WARN -- : Skipping app/models/concerns/presenters/extended_csv.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:48.513588 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:48.722326 #1] WARN -- : Skipping app/models/utility/pcr_cycles_csv_file_upload_config_base.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:48.722358 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:48.937781 #1] WARN -- : Skipping app/models/presenters/plate_presenter.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:48.937815 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:49.346976 #1] WARN -- : Skipping app/models/labware_metadata.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:49.347006 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:49.510847 #1] WARN -- : Skipping app/models/sequencescape_submission.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:49.510876 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:49.594906 #1] WARN -- : Skipping app/models/labware_creators/final_tube.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:49.594949 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:49.850508 #1] WARN -- : Skipping app/models/labware_creators/tagged_plate.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:49.850534 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:49.889612 #1] WARN -- : Skipping app/models/labware_creators/quadrant_split_plate.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:49.889640 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.000800 #1] WARN -- : Skipping app/models/labware_creators/base.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.000834 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.043209 #1] WARN -- : Skipping app/models/labware_creators/custom_tagged_plate.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.043239 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.119825 #1] WARN -- : Skipping app/models/labware_creators/plate_split_to_tube_racks.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.119862 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.200708 #1] WARN -- : Skipping app/models/labware_creators/quadrant_stamp_base.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.200736 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.210283 #1] WARN -- : Skipping app/models/labware_creators/pooled_tubes_by_sample.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.210309 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.335133 #1] WARN -- : Skipping app/helpers/page_helper.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.335159 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.348297 #1] WARN -- : Skipping app/helpers/labware_helper.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.348333 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.352237 #1] WARN -- : Skipping app/helpers/application_helper.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.352263 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.383419 #1] WARN -- : Skipping app/helpers/barcode_labels_helper.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.383639 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.463327 #1] WARN -- : Skipping app/controllers/search_controller.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.463359 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.541722 #1] WARN -- : Skipping app/controllers/labware_controller.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.541761 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.618856 #1] WARN -- : Skipping app/sequencescape/sequencescape/api/v2.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.618887 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.812088 #1] WARN -- : Skipping app/sequencescape/sequencescape/api/v2/shared/has_requests.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.812119 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.960300 #1] WARN -- : Skipping lib/well_helpers.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.960329 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:50.980148 #1] WARN -- : Skipping lib/robot_configuration.rb due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:50.980176 #1] WARN -- : Response status: 422
6	duplication	00:00:06	View output
12 Parser process id: 12 codeclimate-parser socket not present waiting 1s... W, [2024-10-31T10:43:54.477086 #1] WARN -- : Skipping app/frontend/javascript/shared/transfersLayouts.js due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:54.477117 #1] WARN -- : Response status: 422 W, [2024-10-31T10:43:55.071350 #1] WARN -- : Skipping app/frontend/javascript/multi-stamp/components/MultiStampLibrarySplitter.js due to CC::Parser::Client::HTTPError W, [2024-10-31T10:43:55.071666 #1] WARN -- : Response status: 422 I, [2024-10-31T10:43:55.423885 #1] INFO -- : Skipping file ./app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb due to exception (Racc::ParseError): ./app/models/concerns/presenters/statemachine/state_does_not_allow_child_creation.rb:8 :: parse error on value ")" (tRPAREN) I, [2024-10-31T10:43:55.501137 #1] INFO -- : Skipping file ./app/models/concerns/presenters/extended_csv.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:lvar, :index)) I, [2024-10-31T10:43:55.649611 #1] INFO -- : Skipping file ./app/models/utility/pcr_cycles_csv_file_upload_config_base.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :input_amount_desired_min)) I, [2024-10-31T10:43:55.762704 #1] INFO -- : Skipping file ./app/models/presenters/plate_presenter.rb due to exception (Racc::ParseError): ./app/models/presenters/plate_presenter.rb:39 :: parse error on value ":" (tCOLON) I, [2024-10-31T10:43:55.827466 #1] INFO -- : Skipping file ./app/models/labels/tube_label.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :first_line)) I, [2024-10-31T10:43:56.039864 #1] INFO -- : Skipping file ./app/models/labware_metadata.rb due to exception (Racc::ParseError): ./app/models/labware_metadata.rb:8 :: parse error on value ":" (tCOLON) I, [2024-10-31T10:43:56.157920 #1] INFO -- : Skipping file ./app/models/sequencescape_submission.rb due to exception (Racc::ParseError): ./app/models/sequencescape_submission.rb:39 :: parse error on value ":" (tCOLON) I, [2024-10-31T10:43:56.199283 #1] INFO -- : Skipping file ./app/models/labware_creators/final_tube.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :parents)) I, [2024-10-31T10:43:56.240376 #1] INFO -- : Skipping file ./app/models/labware_creators/pcr_cycles_binned_plate/csv_file_base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pcr_cycles_binned_plate/csv_file_base.rb:18 :: parse error on value ":" (tCOLON) I, [2024-10-31T10:43:56.389344 #1] INFO -- : Skipping file ./app/models/labware_creators/tagged_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :tag_plate)) I, [2024-10-31T10:43:56.444212 #1] INFO -- : Skipping file ./app/models/labware_creators/quadrant_split_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :uuid)) I, [2024-10-31T10:43:56.511853 #1] INFO -- : Skipping file ./app/models/labware_creators/base.rb due to exception (Racc::ParseError): ./app/models/labware_creators/base.rb:21 :: parse error on value "%i[" (error) I, [2024-10-31T10:43:56.570464 #1] INFO -- : Skipping file ./app/models/labware_creators/custom_tagged_plate.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :tag_plate)) I, [2024-10-31T10:43:56.667490 #1] INFO -- : Skipping file ./app/models/labware_creators/plate_split_to_tube_racks.rb due to exception (Racc::ParseError): ./app/models/labware_creators/plate_split_to_tube_racks.rb:48 :: parse error on value "%i[" (error) I, [2024-10-31T10:43:56.714340 #1] INFO -- : Skipping file ./app/models/labware_creators/custom_pooled_tubes/csv_file.rb due to exception (Racc::ParseError): ./app/models/labware_creators/custom_pooled_tubes/csv_file.rb:12 :: parse error on value ":" (tCOLON) I, [2024-10-31T10:43:56.808906 #1] INFO -- : Skipping file ./app/models/labware_creators/quadrant_stamp_base.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :transfers)) I, [2024-10-31T10:43:56.837693 #1] INFO -- : Skipping file ./app/models/labware_creators/pooled_tubes_by_sample.rb due to exception (Racc::ParseError): ./app/models/labware_creators/pooled_tubes_by_sample.rb:20 :: parse error on value ":" (tCOLON) I, [2024-10-31T10:43:56.893662 #1] INFO -- : Skipping file ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack.rb due to exception (Racc::ParseError): ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack.rb:54 :: parse error on value "]" (tRBRACK) I, [2024-10-31T10:43:56.906019 #1] INFO -- : Skipping file ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack_with_rack_barcode.rb due to exception (Racc::ParseError): ./app/models/labware_creators/common_file_handling/csv_file_for_tube_rack_with_rack_barcode.rb:31 :: parse error on value "]" (tRBRACK) I, [2024-10-31T10:43:56.917433 #1] INFO -- : Skipping file ./app/helpers/page_helper.rb due to exception (Racc::ParseError): ./app/helpers/page_helper.rb:5 :: parse error on value ":" (tCOLON) I, [2024-10-31T10:43:56.928409 #1] INFO -- : Skipping file ./app/helpers/labware_helper.rb due to exception (Racc::ParseError): ./app/helpers/labware_helper.rb:5 :: parse error on value ":" (tCOLON) I, [2024-10-31T10:43:56.942346 #1] INFO -- : Skipping file ./app/helpers/application_helper.rb due to exception (Racc::ParseError): ./app/helpers/application_helper.rb:30 :: parse error on value ")" (tRPAREN) I, [2024-10-31T10:43:56.970939 #1] INFO -- : Skipping file ./app/helpers/barcode_labels_helper.rb due to exception (Racc::ParseError): ./app/helpers/barcode_labels_helper.rb:5 :: parse error on value ":" (tSYMBEG) I, [2024-10-31T10:43:57.057399 #1] INFO -- : Skipping file ./app/controllers/search_controller.rb due to exception (Racc::ParseError): ./app/controllers/search_controller.rb:8 :: parse error on value ":" (tCOLON) I, [2024-10-31T10:43:57.155356 #1] INFO -- : Skipping file ./app/controllers/labware_controller.rb due to exception (Racc::ParseError): ./app/controllers/labware_controller.rb:11 :: parse error on value ":" (tCOLON) I, [2024-10-31T10:43:57.179731 #1] INFO -- : Skipping file ./app/controllers/robots_controller.rb due to exception (Racc::ParseError): ./app/controllers/robots_controller.rb:14 :: parse error on value ":" (tCOLON) I, [2024-10-31T10:43:57.226128 #1] INFO -- : Skipping file ./app/sequencescape/sequencescape/api/v2.rb due to exception (RubyParser::SyntaxError): Odd number (2) list for Hash. s(:array, s(:call, nil, :child_plates)) I, [2024-10-31T10:43:57.293958 #1] INFO -- : Skipping file ./app/sequencescape/sequencescape/api/v2/shared/has_requests.rb due to exception (Racc::ParseError): ./app/sequencescape/sequencescape/api/v2/shared/has_requests.rb:44 :: parse error on value "&." (error) I, [2024-10-31T10:43:57.378261 #1] INFO -- : Skipping file ./lib/well_helpers.rb due to exception (Racc::ParseError): ./lib/well_helpers.rb:9 :: parse error on value ":" (tCOLON) I, [2024-10-31T10:43:57.420876 #1] INFO -- : Skipping file ./lib/robot_configuration.rb due to exception (Racc::ParseError): ./lib/robot_configuration.rb:9 :: parse error on value ":" (tCOLON)