Build #4791 - sanger/sequencescape

removed unneeded prettier ignore lines and added lsp directory #4791

Andrew Sparkes authored f35a52b5

complete00:01:16

1	git clone	00:00:02
2	codeclimate validate-config	00:00:01	View output
`codeclimate validate-config No errors or warnings found in .codeclimate.yml.`
3	codeclimate prepare	00:00:01	View output
`codeclimate prepare`
4	builder pull-engines	00:00:07	View output
determining required images docker pull codeclimate/codeclimate-reek:b1077 b1077: Pulling from codeclimate/codeclimate-reek 169185f82c45: Pulling fs layer 222c39e7aa7a: Pulling fs layer 07546bd8601e: Pulling fs layer 7614965d2143: Pulling fs layer 7c1c951cf875: Pulling fs layer 5677c441f256: Pulling fs layer efdfcd8fbec1: Pulling fs layer c7595784a397: Pulling fs layer f514b96dbbe5: Pulling fs layer 7631fbb23e31: Pulling fs layer 1c1134c7116e: Pulling fs layer c35a874b378d: Pulling fs layer 5677c441f256: Waiting efdfcd8fbec1: Waiting c7595784a397: Waiting f514b96dbbe5: Waiting 7631fbb23e31: Waiting 1c1134c7116e: Waiting 7614965d2143: Waiting c35a874b378d: Waiting 7c1c951cf875: Waiting 222c39e7aa7a: Verifying Checksum 222c39e7aa7a: Download complete 169185f82c45: Verifying Checksum 169185f82c45: Download complete 07546bd8601e: Verifying Checksum 07546bd8601e: Download complete 7614965d2143: Download complete 169185f82c45: Pull complete 222c39e7aa7a: Pull complete efdfcd8fbec1: Verifying Checksum efdfcd8fbec1: Download complete 5677c441f256: Verifying Checksum 5677c441f256: Download complete f514b96dbbe5: Download complete c7595784a397: Verifying Checksum c7595784a397: Download complete 1c1134c7116e: Download complete 7631fbb23e31: Verifying Checksum 7631fbb23e31: Download complete 7c1c951cf875: Verifying Checksum 7c1c951cf875: Download complete c35a874b378d: Verifying Checksum c35a874b378d: Download complete 07546bd8601e: Pull complete 7614965d2143: Pull complete 7c1c951cf875: Pull complete 5677c441f256: Pull complete efdfcd8fbec1: Pull complete c7595784a397: Pull complete f514b96dbbe5: Pull complete 7631fbb23e31: Pull complete 1c1134c7116e: Pull complete c35a874b378d: Pull complete Digest: sha256:5874e782ab8172808ddb4217d6a62d59f8ecbb0984a612f8d2c2a956dc8b2e7e Status: Downloaded newer image for registry.prod.codeclimate.net/codeclimate/codeclimate-reek:b1077 docker pull codeclimate/codeclimate-flog:b976 b976: Pulling from codeclimate/codeclimate-flog df20fa9351a1: Pulling fs layer b79bab524d4c: Pulling fs layer 8f5dd72031b5: Pulling fs layer 322f2010e51b: Pulling fs layer da44f014aa21: Pulling fs layer 5d9ebd8a80b7: Pulling fs layer 5164282ac966: Pulling fs layer 362bcfd2d785: Pulling fs layer 5ae01dee2213: Pulling fs layer e77c316d3f67: Pulling fs layer b0f4d98df8a9: Pulling fs layer da44f014aa21: Waiting 5164282ac966: Waiting 362bcfd2d785: Waiting 5ae01dee2213: Waiting e77c316d3f67: Waiting 322f2010e51b: Waiting b0f4d98df8a9: Waiting 5d9ebd8a80b7: Waiting 8f5dd72031b5: Verifying Checksum 8f5dd72031b5: Download complete b79bab524d4c: Verifying Checksum b79bab524d4c: Download complete df20fa9351a1: Download complete da44f014aa21: Verifying Checksum da44f014aa21: Download complete df20fa9351a1: Pull complete 5d9ebd8a80b7: Verifying Checksum 5d9ebd8a80b7: Download complete b79bab524d4c: Pull complete 5164282ac966: Verifying Checksum 5164282ac966: Download complete 8f5dd72031b5: Pull complete 362bcfd2d785: Verifying Checksum 362bcfd2d785: Download complete 322f2010e51b: Verifying Checksum 322f2010e51b: Download complete 5ae01dee2213: Verifying Checksum 5ae01dee2213: Download complete b0f4d98df8a9: Download complete e77c316d3f67: Download complete 322f2010e51b: Pull complete da44f014aa21: Pull complete 5d9ebd8a80b7: Pull complete 5164282ac966: Pull complete 362bcfd2d785: Pull complete 5ae01dee2213: Pull complete e77c316d3f67: Pull complete b0f4d98df8a9: Pull complete Digest: sha256:536a5127f62d41c9014b12a035f064870dd4cd6db0a0c90ed18b15c4fa7e3f3d Status: Downloaded newer image for registry.prod.codeclimate.net/codeclimate/codeclimate-flog:b976
5	structure	00:00:18	View output
12 Parser process id: 12 codeclimate-parser socket not present waiting 1s... W, [2024-04-04T13:11:11.153325 #1] WARN -- : Skipping app/models/request_type/validator.rb due to CC::Parser::Client::HTTPError W, [2024-04-04T13:11:11.153366 #1] WARN -- : Response status: 422 W, [2024-04-04T13:11:14.246644 #1] WARN -- : Skipping app/models/submission/order_presenter.rb due to CC::Parser::Client::HTTPError W, [2024-04-04T13:11:14.246686 #1] WARN -- : Response status: 422 W, [2024-04-04T13:11:19.398679 #1] WARN -- : Skipping app/api/core/abilities.rb due to CC::Parser::Client::HTTPError W, [2024-04-04T13:11:19.398721 #1] WARN -- : Response status: 422 W, [2024-04-04T13:11:19.775923 #1] WARN -- : Skipping app/api/core/endpoint/basic_handler/actions/guards.rb due to CC::Parser::Client::HTTPError W, [2024-04-04T13:11:19.775960 #1] WARN -- : Response status: 422
6	duplication	00:00:12	View output
12 Parser process id: 12 codeclimate-parser socket not present waiting 1s... I, [2024-04-04T13:11:27.339558 #1] INFO -- : Skipping file ./app/uat_actions/uat_actions/generate_tubes.rb due to exception (Racc::ParseError): ./app/uat_actions/uat_actions/generate_tubes.rb:11 :: parse error on value ":" (tCOLON) I, [2024-04-04T13:11:28.275789 #1] INFO -- : Skipping file ./app/models/request_type/validator.rb due to exception (Racc::ParseError): ./app/models/request_type/validator.rb:21 :: parse error on value ":" (tCOLON) I, [2024-04-04T13:11:28.530001 #1] INFO -- : Skipping file ./app/models/tube_rack.rb due to exception (Racc::ParseError): ./app/models/tube_rack.rb:10 :: parse error on value ":" (tCOLON) I, [2024-04-04T13:11:28.778051 #1] INFO -- : Skipping file ./app/models/cherrypick/volume_by_nano_grams.rb due to exception (Racc::ParseError): ./app/models/cherrypick/volume_by_nano_grams.rb:84 :: parse error on value ")" (tRPAREN) I, [2024-04-04T13:11:28.877697 #1] INFO -- : Skipping file ./app/models/plate_volume.rb due to exception (Racc::ParseError): ./app/models/plate_volume.rb:9 :: parse error on value ":" (tCOLON) I, [2024-04-04T13:11:29.154234 #1] INFO -- : Skipping file ./app/models/plate/quad_creator.rb due to exception (Racc::ParseError): ./app/models/plate/quad_creator.rb:10 :: parse error on value ":" (tCOLON) I, [2024-04-04T13:11:29.689364 #1] INFO -- : Skipping file ./app/models/pulldown/plate_purposes.rb due to exception (Racc::ParseError): ./app/models/pulldown/plate_purposes.rb:75 :: parse error on value ":" (tCOLON) I, [2024-04-04T13:11:30.369612 #1] INFO -- : Skipping file ./app/models/submission/order_presenter.rb due to exception (Racc::ParseError): ./app/models/submission/order_presenter.rb:20 :: parse error on value "..." (tDOT3) I, [2024-04-04T13:11:30.762867 #1] INFO -- : Skipping file ./app/models/qc_report/file.rb due to exception (Racc::ParseError): ./app/models/qc_report/file.rb:36 :: parse error on value ["rescue", 36] (kRESCUE) I, [2024-04-04T13:11:32.930527 #1] INFO -- : Skipping file ./app/api/core/abilities.rb due to exception (Racc::ParseError): ./app/api/core/abilities.rb:46 :: parse error on value "..." (tDOT3) I, [2024-04-04T13:11:33.173244 #1] INFO -- : Skipping file ./app/api/core/endpoint/basic_handler/actions/guards.rb due to exception (Racc::ParseError): ./app/api/core/endpoint/basic_handler/actions/guards.rb:29 :: parse error on value ":" (tCOLON) I, [2024-04-04T13:11:33.659340 #1] INFO -- : Skipping file ./app/sequencescape_excel/sequencescape_excel/column_list.rb due to exception (Racc::ParseError): ./app/sequencescape_excel/sequencescape_excel/column_list.rb:8 :: parse error on value ":" (tCOLON)
7	fixme fixme engine documentation	00:00:00
8	reek reek engine documentation	00:00:17	View output
!!! Source 'app/models/request_type/validator.rb' cannot be processed by Reek due to a syntax error in the source file. This is a problem that is outside of Reek's scope and should be fixed by you, the user, in order for Reek being able to continue. Things you can try: - Check the syntax of the problematic file - If the file is not in fact a Ruby file, exclude it in your .reek.yml file Exception message: #<Parser::SyntaxError: unexpected token tDOT3> Original backtrace: /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/diagnostic/engine.rb:72:in `process' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:286:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:190:in `parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:207:in `parse_with_comments' /usr/src/app/lib/reek/source/source_code.rb:117:in `parse' /usr/src/app/lib/reek/source/source_code.rb:53:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:116:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:120:in `examine_tree' /usr/src/app/lib/reek/examiner.rb:94:in `block in run' /usr/src/app/lib/reek/examiner.rb:104:in `wrap_exceptions' /usr/src/app/lib/reek/examiner.rb:93:in `run' /usr/src/app/lib/reek/examiner.rb:61:in `smells' /usr/src/app/lib/reek/examiner.rb:69:in `smells_count' /usr/src/app/lib/reek/report/base_report.rb:44:in `add_examiner' /usr/src/app/lib/reek/cli/command/report_command.rb:26:in `block in populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `each' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:17:in `execute' /usr/src/app/lib/reek/cli/application.rb:32:in `execute' /usr/src/app/bin/code_climate_reek:68:in `<main>' !!! !!! Source 'app/models/submission/order_presenter.rb' cannot be processed by Reek due to a syntax error in the source file. This is a problem that is outside of Reek's scope and should be fixed by you, the user, in order for Reek being able to continue. Things you can try: - Check the syntax of the problematic file - If the file is not in fact a Ruby file, exclude it in your .reek.yml file Exception message: #<Parser::SyntaxError: unexpected token tDOT3> Original backtrace: /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/diagnostic/engine.rb:72:in `process' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:286:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:190:in `parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:207:in `parse_with_comments' /usr/src/app/lib/reek/source/source_code.rb:117:in `parse' /usr/src/app/lib/reek/source/source_code.rb:53:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:116:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:120:in `examine_tree' /usr/src/app/lib/reek/examiner.rb:94:in `block in run' /usr/src/app/lib/reek/examiner.rb:104:in `wrap_exceptions' /usr/src/app/lib/reek/examiner.rb:93:in `run' /usr/src/app/lib/reek/examiner.rb:61:in `smells' /usr/src/app/lib/reek/examiner.rb:69:in `smells_count' /usr/src/app/lib/reek/report/base_report.rb:44:in `add_examiner' /usr/src/app/lib/reek/cli/command/report_command.rb:26:in `block in populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `each' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:17:in `execute' /usr/src/app/lib/reek/cli/application.rb:32:in `execute' /usr/src/app/bin/code_climate_reek:68:in `<main>' !!! !!! Source 'app/api/core/abilities.rb' cannot be processed by Reek due to a syntax error in the source file. This is a problem that is outside of Reek's scope and should be fixed by you, the user, in order for Reek being able to continue. Things you can try: - Check the syntax of the problematic file - If the file is not in fact a Ruby file, exclude it in your .reek.yml file Exception message: #<Parser::SyntaxError: unexpected token tDOT3> Original backtrace: /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/diagnostic/engine.rb:72:in `process' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:286:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:190:in `parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:207:in `parse_with_comments' /usr/src/app/lib/reek/source/source_code.rb:117:in `parse' /usr/src/app/lib/reek/source/source_code.rb:53:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:116:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:120:in `examine_tree' /usr/src/app/lib/reek/examiner.rb:94:in `block in run' /usr/src/app/lib/reek/examiner.rb:104:in `wrap_exceptions' /usr/src/app/lib/reek/examiner.rb:93:in `run' /usr/src/app/lib/reek/examiner.rb:61:in `smells' /usr/src/app/lib/reek/examiner.rb:69:in `smells_count' /usr/src/app/lib/reek/report/base_report.rb:44:in `add_examiner' /usr/src/app/lib/reek/cli/command/report_command.rb:26:in `block in populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `each' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:17:in `execute' /usr/src/app/lib/reek/cli/application.rb:32:in `execute' /usr/src/app/bin/code_climate_reek:68:in `<main>' !!! !!! Source 'app/api/core/endpoint/basic_handler/actions/guards.rb' cannot be processed by Reek due to a syntax error in the source file. This is a problem that is outside of Reek's scope and should be fixed by you, the user, in order for Reek being able to continue. Things you can try: - Check the syntax of the problematic file - If the file is not in fact a Ruby file, exclude it in your .reek.yml file Exception message: #<Parser::SyntaxError: unexpected token tDOT3> Original backtrace: /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/diagnostic/engine.rb:72:in `process' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:286:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:190:in `parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:207:in `parse_with_comments' /usr/src/app/lib/reek/source/source_code.rb:117:in `parse' /usr/src/app/lib/reek/source/source_code.rb:53:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:116:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:120:in `examine_tree' /usr/src/app/lib/reek/examiner.rb:94:in `block in run' /usr/src/app/lib/reek/examiner.rb:104:in `wrap_exceptions' /usr/src/app/lib/reek/examiner.rb:93:in `run' /usr/src/app/lib/reek/examiner.rb:61:in `smells' /usr/src/app/lib/reek/examiner.rb:69:in `smells_count' /usr/src/app/lib/reek/report/base_report.rb:44:in `add_examiner' /usr/src/app/lib/reek/cli/command/report_command.rb:26:in `block in populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `each' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:17:in `execute' /usr/src/app/lib/reek/cli/application.rb:32:in `execute' /usr/src/app/bin/code_climate_reek:68:in `<main>' !!!
9	bundler-audit bundler-audit engine documentation	00:00:00
10	flog flog engine documentation	00:00:06	View output
ERROR: parsing ruby file app/models/request_type/validator.rb Racc::ParseError: app/models/request_type/validator.rb:77 :: parse error on value "..." (tDOT3) at: /usr/local/lib/ruby/2.6.0/racc/parser.rb:528:in `on_error' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1179:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1086:in `block in process' ERROR: parsing ruby file app/models/submission/order_presenter.rb Racc::ParseError: app/models/submission/order_presenter.rb:20 :: parse error on value "..." (tDOT3) at: /usr/local/lib/ruby/2.6.0/racc/parser.rb:528:in `on_error' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1179:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1086:in `block in process' ERROR: parsing ruby file app/api/core/abilities.rb Racc::ParseError: app/api/core/abilities.rb:46 :: parse error on value "..." (tDOT3) at: /usr/local/lib/ruby/2.6.0/racc/parser.rb:528:in `on_error' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1179:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1086:in `block in process' ERROR: parsing ruby file app/api/core/endpoint/basic_handler/actions/guards.rb Racc::ParseError: app/api/core/endpoint/basic_handler/actions/guards.rb:47 :: parse error on value "..." (tDOT3) at: /usr/local/lib/ruby/2.6.0/racc/parser.rb:528:in `on_error' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1179:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1086:in `block in process'