Build #4857 - sanger/sequencescape

Remove IDE-specific settings files from repo #4857

yoldas authored 8f7ab40f

complete00:01:13

1	git clone	00:00:02
2	codeclimate validate-config	00:00:01	View output
`codeclimate validate-config No errors or warnings found in .codeclimate.yml.`
3	codeclimate prepare	00:00:01	View output
`codeclimate prepare`
4	builder pull-engines	00:00:03	View output
determining required images docker pull codeclimate/codeclimate-bundler-audit:b290 b290: Pulling from codeclimate/codeclimate-bundler-audit 5a3ea8efae5d: Pulling fs layer c994900c491f: Pulling fs layer 2e580f924dd2: Pulling fs layer a5affcf696a9: Pulling fs layer 97dae80db3d1: Pulling fs layer 9ef7b90e0f65: Pulling fs layer 93bbf0c6ac24: Pulling fs layer fd215c3ecc6d: Pulling fs layer fe005a660090: Pulling fs layer 3db334767449: Pulling fs layer 6a35206c5685: Pulling fs layer a5affcf696a9: Waiting 97dae80db3d1: Waiting 9ef7b90e0f65: Waiting 93bbf0c6ac24: Waiting fd215c3ecc6d: Waiting fe005a660090: Waiting 3db334767449: Waiting 6a35206c5685: Waiting 2e580f924dd2: Download complete c994900c491f: Verifying Checksum c994900c491f: Download complete 5a3ea8efae5d: Verifying Checksum 5a3ea8efae5d: Download complete 5a3ea8efae5d: Pull complete 97dae80db3d1: Verifying Checksum 97dae80db3d1: Download complete 9ef7b90e0f65: Verifying Checksum 9ef7b90e0f65: Download complete a5affcf696a9: Verifying Checksum a5affcf696a9: Download complete c994900c491f: Pull complete 93bbf0c6ac24: Verifying Checksum 93bbf0c6ac24: Download complete fd215c3ecc6d: Download complete fe005a660090: Verifying Checksum fe005a660090: Download complete 2e580f924dd2: Pull complete 3db334767449: Verifying Checksum 3db334767449: Download complete 6a35206c5685: Verifying Checksum 6a35206c5685: Download complete a5affcf696a9: Pull complete 97dae80db3d1: Pull complete 9ef7b90e0f65: Pull complete 93bbf0c6ac24: Pull complete fd215c3ecc6d: Pull complete fe005a660090: Pull complete 3db334767449: Pull complete 6a35206c5685: Pull complete Digest: sha256:7ad167553c060cb2f9dd9b211c7d01a05c79c29b400a91604691b3144c9fa19a Status: Downloaded newer image for registry.prod.codeclimate.net/codeclimate/codeclimate-bundler-audit:b290
5	structure	00:00:18	View output
12 Parser process id: 12 codeclimate-parser socket not present waiting 1s... W, [2024-04-30T09:14:32.536040 #1] WARN -- : Skipping app/models/request_type/validator.rb due to CC::Parser::Client::HTTPError W, [2024-04-30T09:14:32.536079 #1] WARN -- : Response status: 422 W, [2024-04-30T09:14:35.635549 #1] WARN -- : Skipping app/models/submission/order_presenter.rb due to CC::Parser::Client::HTTPError W, [2024-04-30T09:14:35.635583 #1] WARN -- : Response status: 422 W, [2024-04-30T09:14:40.856372 #1] WARN -- : Skipping app/api/core/abilities.rb due to CC::Parser::Client::HTTPError W, [2024-04-30T09:14:40.856408 #1] WARN -- : Response status: 422 W, [2024-04-30T09:14:41.217702 #1] WARN -- : Skipping app/api/core/endpoint/basic_handler/actions/guards.rb due to CC::Parser::Client::HTTPError W, [2024-04-30T09:14:41.217737 #1] WARN -- : Response status: 422
6	duplication	00:00:13	View output
12 Parser process id: 12 codeclimate-parser socket not present waiting 1s... I, [2024-04-30T09:14:48.609399 #1] INFO -- : Skipping file ./app/uat_actions/uat_actions/generate_tubes.rb due to exception (Racc::ParseError): ./app/uat_actions/uat_actions/generate_tubes.rb:11 :: parse error on value ":" (tCOLON) I, [2024-04-30T09:14:49.695194 #1] INFO -- : Skipping file ./app/models/request_type/validator.rb due to exception (Racc::ParseError): ./app/models/request_type/validator.rb:21 :: parse error on value ":" (tCOLON) I, [2024-04-30T09:14:50.012589 #1] INFO -- : Skipping file ./app/models/tube_rack.rb due to exception (Racc::ParseError): ./app/models/tube_rack.rb:10 :: parse error on value ":" (tCOLON) I, [2024-04-30T09:14:50.264945 #1] INFO -- : Skipping file ./app/models/cherrypick/volume_by_nano_grams.rb due to exception (Racc::ParseError): ./app/models/cherrypick/volume_by_nano_grams.rb:84 :: parse error on value ")" (tRPAREN) I, [2024-04-30T09:14:50.382130 #1] INFO -- : Skipping file ./app/models/plate_volume.rb due to exception (Racc::ParseError): ./app/models/plate_volume.rb:9 :: parse error on value ":" (tCOLON) I, [2024-04-30T09:14:50.750584 #1] INFO -- : Skipping file ./app/models/plate/quad_creator.rb due to exception (Racc::ParseError): ./app/models/plate/quad_creator.rb:10 :: parse error on value ":" (tCOLON) I, [2024-04-30T09:14:51.388958 #1] INFO -- : Skipping file ./app/models/pulldown/plate_purposes.rb due to exception (Racc::ParseError): ./app/models/pulldown/plate_purposes.rb:75 :: parse error on value ":" (tCOLON) I, [2024-04-30T09:14:52.130555 #1] INFO -- : Skipping file ./app/models/submission/order_presenter.rb due to exception (Racc::ParseError): ./app/models/submission/order_presenter.rb:20 :: parse error on value "..." (tDOT3) I, [2024-04-30T09:14:52.569686 #1] INFO -- : Skipping file ./app/models/qc_report/file.rb due to exception (Racc::ParseError): ./app/models/qc_report/file.rb:36 :: parse error on value ["rescue", 36] (kRESCUE) I, [2024-04-30T09:14:55.348548 #1] INFO -- : Skipping file ./app/api/core/abilities.rb due to exception (Racc::ParseError): ./app/api/core/abilities.rb:46 :: parse error on value "..." (tDOT3) I, [2024-04-30T09:14:55.595868 #1] INFO -- : Skipping file ./app/api/core/endpoint/basic_handler/actions/guards.rb due to exception (Racc::ParseError): ./app/api/core/endpoint/basic_handler/actions/guards.rb:29 :: parse error on value ":" (tCOLON) I, [2024-04-30T09:14:56.136059 #1] INFO -- : Skipping file ./app/sequencescape_excel/sequencescape_excel/column_list.rb due to exception (Racc::ParseError): ./app/sequencescape_excel/sequencescape_excel/column_list.rb:8 :: parse error on value ":" (tCOLON)
7	fixme fixme engine documentation	00:00:00
8	reek reek engine documentation	00:00:18	View output
!!! Source 'app/models/request_type/validator.rb' cannot be processed by Reek due to a syntax error in the source file. This is a problem that is outside of Reek's scope and should be fixed by you, the user, in order for Reek being able to continue. Things you can try: - Check the syntax of the problematic file - If the file is not in fact a Ruby file, exclude it in your .reek.yml file Exception message: #<Parser::SyntaxError: unexpected token tDOT3> Original backtrace: /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/diagnostic/engine.rb:72:in `process' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:286:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:190:in `parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:207:in `parse_with_comments' /usr/src/app/lib/reek/source/source_code.rb:117:in `parse' /usr/src/app/lib/reek/source/source_code.rb:53:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:116:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:120:in `examine_tree' /usr/src/app/lib/reek/examiner.rb:94:in `block in run' /usr/src/app/lib/reek/examiner.rb:104:in `wrap_exceptions' /usr/src/app/lib/reek/examiner.rb:93:in `run' /usr/src/app/lib/reek/examiner.rb:61:in `smells' /usr/src/app/lib/reek/examiner.rb:69:in `smells_count' /usr/src/app/lib/reek/report/base_report.rb:44:in `add_examiner' /usr/src/app/lib/reek/cli/command/report_command.rb:26:in `block in populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `each' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:17:in `execute' /usr/src/app/lib/reek/cli/application.rb:32:in `execute' /usr/src/app/bin/code_climate_reek:68:in `<main>' !!! !!! Source 'app/models/submission/order_presenter.rb' cannot be processed by Reek due to a syntax error in the source file. This is a problem that is outside of Reek's scope and should be fixed by you, the user, in order for Reek being able to continue. Things you can try: - Check the syntax of the problematic file - If the file is not in fact a Ruby file, exclude it in your .reek.yml file Exception message: #<Parser::SyntaxError: unexpected token tDOT3> Original backtrace: /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/diagnostic/engine.rb:72:in `process' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:286:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:190:in `parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:207:in `parse_with_comments' /usr/src/app/lib/reek/source/source_code.rb:117:in `parse' /usr/src/app/lib/reek/source/source_code.rb:53:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:116:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:120:in `examine_tree' /usr/src/app/lib/reek/examiner.rb:94:in `block in run' /usr/src/app/lib/reek/examiner.rb:104:in `wrap_exceptions' /usr/src/app/lib/reek/examiner.rb:93:in `run' /usr/src/app/lib/reek/examiner.rb:61:in `smells' /usr/src/app/lib/reek/examiner.rb:69:in `smells_count' /usr/src/app/lib/reek/report/base_report.rb:44:in `add_examiner' /usr/src/app/lib/reek/cli/command/report_command.rb:26:in `block in populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `each' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:17:in `execute' /usr/src/app/lib/reek/cli/application.rb:32:in `execute' /usr/src/app/bin/code_climate_reek:68:in `<main>' !!! !!! Source 'app/api/core/abilities.rb' cannot be processed by Reek due to a syntax error in the source file. This is a problem that is outside of Reek's scope and should be fixed by you, the user, in order for Reek being able to continue. Things you can try: - Check the syntax of the problematic file - If the file is not in fact a Ruby file, exclude it in your .reek.yml file Exception message: #<Parser::SyntaxError: unexpected token tDOT3> Original backtrace: /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/diagnostic/engine.rb:72:in `process' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:286:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:190:in `parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:207:in `parse_with_comments' /usr/src/app/lib/reek/source/source_code.rb:117:in `parse' /usr/src/app/lib/reek/source/source_code.rb:53:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:116:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:120:in `examine_tree' /usr/src/app/lib/reek/examiner.rb:94:in `block in run' /usr/src/app/lib/reek/examiner.rb:104:in `wrap_exceptions' /usr/src/app/lib/reek/examiner.rb:93:in `run' /usr/src/app/lib/reek/examiner.rb:61:in `smells' /usr/src/app/lib/reek/examiner.rb:69:in `smells_count' /usr/src/app/lib/reek/report/base_report.rb:44:in `add_examiner' /usr/src/app/lib/reek/cli/command/report_command.rb:26:in `block in populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `each' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:17:in `execute' /usr/src/app/lib/reek/cli/application.rb:32:in `execute' /usr/src/app/bin/code_climate_reek:68:in `<main>' !!! !!! Source 'app/api/core/endpoint/basic_handler/actions/guards.rb' cannot be processed by Reek due to a syntax error in the source file. This is a problem that is outside of Reek's scope and should be fixed by you, the user, in order for Reek being able to continue. Things you can try: - Check the syntax of the problematic file - If the file is not in fact a Ruby file, exclude it in your .reek.yml file Exception message: #<Parser::SyntaxError: unexpected token tDOT3> Original backtrace: /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/diagnostic/engine.rb:72:in `process' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:286:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:190:in `parse' /usr/local/bundle/gems/parser-3.0.2.0/lib/parser/base.rb:207:in `parse_with_comments' /usr/src/app/lib/reek/source/source_code.rb:117:in `parse' /usr/src/app/lib/reek/source/source_code.rb:53:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:116:in `syntax_tree' /usr/src/app/lib/reek/examiner.rb:120:in `examine_tree' /usr/src/app/lib/reek/examiner.rb:94:in `block in run' /usr/src/app/lib/reek/examiner.rb:104:in `wrap_exceptions' /usr/src/app/lib/reek/examiner.rb:93:in `run' /usr/src/app/lib/reek/examiner.rb:61:in `smells' /usr/src/app/lib/reek/examiner.rb:69:in `smells_count' /usr/src/app/lib/reek/report/base_report.rb:44:in `add_examiner' /usr/src/app/lib/reek/cli/command/report_command.rb:26:in `block in populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `each' /usr/src/app/lib/reek/cli/command/report_command.rb:25:in `populate_reporter_with_smells' /usr/src/app/lib/reek/cli/command/report_command.rb:17:in `execute' /usr/src/app/lib/reek/cli/application.rb:32:in `execute' /usr/src/app/bin/code_climate_reek:68:in `<main>' !!!
9	bundler-audit bundler-audit engine documentation	00:00:00
10	flog flog engine documentation	00:00:06	View output
ERROR: parsing ruby file app/models/request_type/validator.rb Racc::ParseError: app/models/request_type/validator.rb:77 :: parse error on value "..." (tDOT3) at: /usr/local/lib/ruby/2.6.0/racc/parser.rb:528:in `on_error' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1179:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1086:in `block in process' ERROR: parsing ruby file app/models/submission/order_presenter.rb Racc::ParseError: app/models/submission/order_presenter.rb:20 :: parse error on value "..." (tDOT3) at: /usr/local/lib/ruby/2.6.0/racc/parser.rb:528:in `on_error' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1179:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1086:in `block in process' ERROR: parsing ruby file app/api/core/abilities.rb Racc::ParseError: app/api/core/abilities.rb:46 :: parse error on value "..." (tDOT3) at: /usr/local/lib/ruby/2.6.0/racc/parser.rb:528:in `on_error' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1179:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1086:in `block in process' ERROR: parsing ruby file app/api/core/endpoint/basic_handler/actions/guards.rb Racc::ParseError: app/api/core/endpoint/basic_handler/actions/guards.rb:47 :: parse error on value "..." (tDOT3) at: /usr/local/lib/ruby/2.6.0/racc/parser.rb:528:in `on_error' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1179:in `on_error' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `_racc_do_parse_c' /usr/local/lib/ruby/2.6.0/racc/parser.rb:259:in `do_parse' /usr/local/bundle/gems/ruby_parser-3.13.1/lib/ruby_parser_extras.rb:1086:in `block in process'