sanger/sequencescape

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Y24-121 - Refactoring validations for pipelines
#4150

dasunpubudumal wants to merge 4135-y24-121-as-a-developer-ben-i-would-like-there-to-be-fine-grained-batch-creation-validation-for-sequencing-pipelines into develop
Failed
11 issues to fix.

BatchCreationValidator#batch_meets_minimum_size calls 'record.min_size' 3 times
New

    return unless record.min_size && (record.requests.size < record.min_size)
    record.errors.add :base, "You must create batches of at least #{record.min_size}

Duplication occurs when two fragments of code look nearly identical, or when two fragments of code have nearly identical effects at some conceptual level.

Reek implements a check for Duplicate Method Call.

Example

Here's a very much simplified and contrived example. The following method will report a warning:

def double_thing()
  @other.thing + @other.thing
end

One quick approach to silence Reek would be to refactor the code thus:

def double_thing()
  thing = @other.thing
  thing + thing
end

A slightly different approach would be to replace all calls of double_thing by calls to @other.double_thing:

class Other
  def double_thing()
    thing + thing
  end
end

The approach you take will depend on balancing other factors in your code.

BatchCreationValidator#all_requests_are_ready? doesn't depend on instance state (maybe move it to another class?)
New

  def all_requests_are_ready?(record)

A Utility Function is any instance method that has no dependency on the state of the instance.

BatchCreationValidator#batch_meets_minimum_size doesn't depend on instance state (maybe move it to another class?)
New

  def batch_meets_minimum_size(record)

A Utility Function is any instance method that has no dependency on the state of the instance.

BatchCreationValidator#requests_have_same_flowcell_type doesn't depend on instance state (maybe move it to another class?)
New

  def requests_have_same_flowcell_type(record)

A Utility Function is any instance method that has no dependency on the state of the instance.

BatchCreationValidator#requests_have_same_read_length doesn't depend on instance state (maybe move it to another class?)
New

  def requests_have_same_read_length(record)

A Utility Function is any instance method that has no dependency on the state of the instance.

BatchCreationValidator#requests_have_same_target_purpose doesn't depend on instance state (maybe move it to another class?)
New

  def requests_have_same_target_purpose(record)

A Utility Function is any instance method that has no dependency on the state of the instance.

DefaultValidator has no descriptive comment
New

class DefaultValidator < CustomValidatorBase
Severity: Minor
Found in app/validators/default_validator.rb by reek

Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

Example

Given

class Dummy
  # Do things...
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [1]:Dummy has no descriptive comment (IrresponsibleModule)

Fixing this is simple - just an explaining comment:

# The Dummy class is responsible for ...
class Dummy
  # Do things...
end

NovaSeq6000Validator has no descriptive comment
New

class NovaSeq6000Validator < CustomValidatorBase

Classes and modules are the units of reuse and release. It is therefore considered good practice to annotate every class and module with a brief comment outlining its responsibilities.

Example

Given

class Dummy
  # Do things...
end

Reek would emit the following warning:

test.rb -- 1 warning:
  [1]:Dummy has no descriptive comment (IrresponsibleModule)

Fixing this is simple - just an explaining comment:

# The Dummy class is responsible for ...
class Dummy
  # Do things...
end

NovaSeq6000Validator#validate doesn't depend on instance state (maybe move it to another class?)
New

  def validate(record)

A Utility Function is any instance method that has no dependency on the state of the instance.

CustomValidatorBase#validate has unused parameter 'record'
New

  def validate(record)
Severity: Minor
Found in lib/custom_validator_base.rb by reek

Unused Parameter refers to methods with parameters that are unused in scope of the method.

Having unused parameters in a method is code smell because leaving dead code in a method can never improve the method and it makes the code confusing to read.

Example

Given:

class Klass
  def unused_parameters(x,y,z)
    puts x,y # but not z
  end
end

Reek would emit the following warning:

[2]:Klass#unused_parameters has unused parameter 'z' (UnusedParameters)

DynamicValidations#get_validator_class doesn't depend on instance state (maybe move it to another class?)
New

  def get_validator_class(pipeline)
Severity: Minor
Found in lib/dynamic_validations.rb by reek

A Utility Function is any instance method that has no dependency on the state of the instance.

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