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Showing 102 of 7,450 total issues

Similar blocks of code found in 3 locations. Consider refactoring.
Open

        point = parentElement.selectAll('.point').data(function(d) {
            return d.values;
        }).enter().append('path').attr('class', 'point').attr('opacity', function(d) {
            return d.opacity || conf.opacity;
        }).attr('d', d3.svg.symbol().type(conf.glyph.shape).size(conf.glyph.size)).attr('transform', (function(_this) {
Severity: Major
Found in public/packages/circosJS@1.7.0.js and 2 other locations - About 2 hrs to fix
public/packages/circosJS@1.7.0.js on lines 675..683
public/packages/circosJS@1.7.0.js on lines 731..755

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 89.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

        svg_legend.append('text')
            .attr('class',' legend-text')
            .attr('transform', 'translate(0, ' +options.legend +')')
            .attr('x', 9.5 * (width - 2 * options.margin) / 10 + options.margin / 2)
            .text('Weaker hits');
Severity: Major
Found in public/js/hits_overview.js and 1 other location - About 2 hrs to fix
public/js/hits_overview.js on lines 189..193

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 89.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

        svg_legend.append('text')
            .attr('class',' legend-text')
            .attr('transform', 'translate(0, ' + options.legend + ')')
            .attr('x', 6.7 * (width - 2 * options.margin) / 10 - options.margin / 2)
            .text('Stronger hits');
Severity: Major
Found in public/js/hits_overview.js and 1 other location - About 2 hrs to fix
public/js/hits_overview.js on lines 180..184

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 89.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

    this.renderDatumContainer = (function(_this) {
        return function(instance, parentElement, name, data, conf) {
            var group, track;
            track = parentElement.append('g').attr('class', name);
            return group = _this.renderBlock(track, data, instance._layout, conf);
Severity: Major
Found in public/packages/circosJS@1.7.0.js and 2 other locations - About 2 hrs to fix
public/packages/circosJS@1.7.0.js on lines 810..816
public/packages/circosJS@1.7.0.js on lines 1010..1016

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 88.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

    this.renderDatumContainer = (function(_this) {
        return function(instance, parentElement, name, data, conf) {
            var group, track;
            track = parentElement.append('g').attr('class', name);
            return group = _this.renderBlock(track, data, instance._layout, conf);
Severity: Major
Found in public/packages/circosJS@1.7.0.js and 2 other locations - About 2 hrs to fix
public/packages/circosJS@1.7.0.js on lines 771..777
public/packages/circosJS@1.7.0.js on lines 1010..1016

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 88.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

  nsseq() {
    switch (this.props.algorithm) {
      case "blastp":
      case "blastx":
      case "tblastn":
Severity: Major
Found in public/js/hsp.js and 1 other location - About 2 hrs to fix
public/js/hsp.js on lines 240..253

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 88.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

    this.renderDatumContainer = (function(_this) {
        return function(instance, parentElement, name, data, conf) {
            var group, track;
            track = parentElement.append('g').attr('class', name);
            return group = _this.renderBlock(track, data, instance._layout, conf);
Severity: Major
Found in public/packages/circosJS@1.7.0.js and 2 other locations - About 2 hrs to fix
public/packages/circosJS@1.7.0.js on lines 771..777
public/packages/circosJS@1.7.0.js on lines 810..816

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 88.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

  nqseq() {
    switch (this.props.algorithm) {
      case "blastp":
      case "blastx":
      case "tblastn":
Severity: Major
Found in public/js/hsp.js and 1 other location - About 2 hrs to fix
public/js/hsp.js on lines 259..272

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 88.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

                    {
                        !this.props.data.imported_xml && <li>
                            <a className="btn-link download" data-toggle="tooltip"
                                title="Results in XML format."
                                href={'download/' + this.props.data.search_id + '.xml'}>
Severity: Major
Found in public/js/sidebar.js and 2 other locations - About 2 hrs to fix
public/js/sidebar.js on lines 320..331
public/js/sidebar.js on lines 332..343

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 87.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    handleDatabaseTypeChanged(type) {
        this.databaseType = type;
        this.refs.button.setState({
            hasQuery: !this.refs.query.isEmpty(),
            hasDatabases: !!this.databaseType,
Severity: Major
Found in public/js/form.js and 1 other location - About 2 hrs to fix
public/js/form.js on lines 141..148

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 87.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

                    {
                        !this.props.data.imported_xml && <li>
                            <a className="btn-link download" data-toggle="tooltip"
                                title="15 columns: query and subject ID; scientific
                                name, alignment length, mismatches, gaps, identity,
Severity: Major
Found in public/js/sidebar.js and 2 other locations - About 2 hrs to fix
public/js/sidebar.js on lines 332..343
public/js/sidebar.js on lines 344..352

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 87.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    handleSequenceTypeChanged(type) {
        this.sequenceType = type;
        this.refs.button.setState({
            hasQuery: !this.refs.query.isEmpty(),
            hasDatabases: !!this.databaseType,
Severity: Major
Found in public/js/form.js and 1 other location - About 2 hrs to fix
public/js/form.js on lines 150..157

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 87.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

                    {
                        !this.props.data.imported_xml && <li>
                            <a className="btn-link download" data-toggle="tooltip"
                                title="44 columns: query and subject ID, GI,
                                accessions, and length; alignment details;
Severity: Major
Found in public/js/sidebar.js and 2 other locations - About 2 hrs to fix
public/js/sidebar.js on lines 320..331
public/js/sidebar.js on lines 344..352

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 87.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    data = data.filter(function(datum, index) {
        return circosJS.checkParent(datum[0], index, layoutSummary, 'parent');
    }).filter(function(datum, index) {
        return circosJS.checkNumber({
            start: datum[1],
Severity: Major
Found in public/packages/circosJS@1.7.0.js and 1 other location - About 2 hrs to fix
public/packages/circosJS@1.7.0.js on lines 310..323

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 85.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    data = data.filter(function(datum, index) {
        return circosJS.checkParent(datum[0], index, layoutSummary, 'parent');
    }).filter(function(datum, index) {
        return circosJS.checkNumber({
            position: datum[1],
Severity: Major
Found in public/packages/circosJS@1.7.0.js and 1 other location - About 2 hrs to fix
public/packages/circosJS@1.7.0.js on lines 263..285

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 85.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 8 locations. Consider refactoring.
Open

circosJS.Core.prototype.histogram = function(id, conf, data) {
    var track;
    track = new circosJS.Histogram();
    track.build(this, conf, data);
    this.tracks.histograms[id] = track;
Severity: Major
Found in public/packages/circosJS@1.7.0.js and 7 other locations - About 2 hrs to fix
public/packages/circosJS@1.7.0.js on lines 489..495
public/packages/circosJS@1.7.0.js on lines 505..511
public/packages/circosJS@1.7.0.js on lines 513..519
public/packages/circosJS@1.7.0.js on lines 521..527
public/packages/circosJS@1.7.0.js on lines 529..535
public/packages/circosJS@1.7.0.js on lines 537..543
public/packages/circosJS@1.7.0.js on lines 545..551

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 81.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 8 locations. Consider refactoring.
Open

circosJS.Core.prototype.scatter = function(id, conf, data) {
    var track;
    track = new circosJS.Scatter();
    track.build(this, conf, data);
    this.tracks.scatters[id] = track;
Severity: Major
Found in public/packages/circosJS@1.7.0.js and 7 other locations - About 2 hrs to fix
public/packages/circosJS@1.7.0.js on lines 489..495
public/packages/circosJS@1.7.0.js on lines 497..503
public/packages/circosJS@1.7.0.js on lines 505..511
public/packages/circosJS@1.7.0.js on lines 521..527
public/packages/circosJS@1.7.0.js on lines 529..535
public/packages/circosJS@1.7.0.js on lines 537..543
public/packages/circosJS@1.7.0.js on lines 545..551

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 81.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 8 locations. Consider refactoring.
Open

circosJS.Core.prototype.line = function(id, conf, data) {
    var track;
    track = new circosJS.Line();
    track.build(this, conf, data);
    this.tracks.lines[id] = track;
Severity: Major
Found in public/packages/circosJS@1.7.0.js and 7 other locations - About 2 hrs to fix
public/packages/circosJS@1.7.0.js on lines 489..495
public/packages/circosJS@1.7.0.js on lines 497..503
public/packages/circosJS@1.7.0.js on lines 505..511
public/packages/circosJS@1.7.0.js on lines 513..519
public/packages/circosJS@1.7.0.js on lines 529..535
public/packages/circosJS@1.7.0.js on lines 537..543
public/packages/circosJS@1.7.0.js on lines 545..551

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 81.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 8 locations. Consider refactoring.
Open

circosJS.Core.prototype.highlight = function(id, conf, data) {
    var track;
    track = new circosJS.Highlight();
    track.build(this, conf, data);
    this.tracks.highlights[id] = track;
Severity: Major
Found in public/packages/circosJS@1.7.0.js and 7 other locations - About 2 hrs to fix
public/packages/circosJS@1.7.0.js on lines 489..495
public/packages/circosJS@1.7.0.js on lines 497..503
public/packages/circosJS@1.7.0.js on lines 505..511
public/packages/circosJS@1.7.0.js on lines 513..519
public/packages/circosJS@1.7.0.js on lines 521..527
public/packages/circosJS@1.7.0.js on lines 529..535
public/packages/circosJS@1.7.0.js on lines 545..551

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 81.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 8 locations. Consider refactoring.
Open

circosJS.Core.prototype.stack = function(id, conf, data) {
    var track;
    track = new circosJS.Stack();
    track.build(this, conf, data);
    this.tracks.stacks[id] = track;
Severity: Major
Found in public/packages/circosJS@1.7.0.js and 7 other locations - About 2 hrs to fix
public/packages/circosJS@1.7.0.js on lines 489..495
public/packages/circosJS@1.7.0.js on lines 497..503
public/packages/circosJS@1.7.0.js on lines 505..511
public/packages/circosJS@1.7.0.js on lines 513..519
public/packages/circosJS@1.7.0.js on lines 521..527
public/packages/circosJS@1.7.0.js on lines 537..543
public/packages/circosJS@1.7.0.js on lines 545..551

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 81.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

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