Showing 107 of 113 total issues
Function run_calculator has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
def run_calculator(self):
"""Perform the distinct coefficient analysis analysis."""
self.check_input()
for combination in self.combinations:
species_values = list(combination)- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function _map_molecules has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
def _map_molecules(self, molecular_graph: MolecularGraph):
"""
Map the molecules and save the data in the database.
Returns- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function _calculate_prefactor has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
def _calculate_prefactor(self, species: Union[str, tuple] = None):
"""
Calculate the relevant prefactor for the analysis.
Parameters- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function check_input has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
def check_input(self):
"""
Check the inputs and set defaults if necessary.
Returns- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function _prepare_data_structure has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
def _prepare_data_structure(self):
"""
Prepare variables and dicts for the analysis.
Returns- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function _read_process_n_configurations has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
def _read_process_n_configurations(
self, traj: chemfiles.Trajectory, n_configs: int
) -> mdsuite.database.simulation_database.TrajectoryChunkData:
"""
Read n configurations and package them into a trajectory chunk of the- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function run_transformation has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
def run_transformation(self, molecules: List[Molecule]):
"""
Perform the transformation.
Parameters- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"