Sign upLogin

BjornFJohansson/pydna

View on GitHub
Star
scripts/BioJSON-master/genbank_writer.py

Summary

Maintainability
A
2 hrs
Test Coverage

Function toGB has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.
Open

def toGB(jseqs):
    "parses json jseq data and prints out ApE compatible genbank"

    # take first jseq from parsed list
    if type(jseqs) == type([]):
Severity: Minor
Found in scripts/BioJSON-master/genbank_writer.py - About 1 hr to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function wrapstring has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
Open

def wrapstring(str_, rowstart, rowend, padfirst=True):
    """
    wraps the provided string in lines of length rowend-rowstart
    and padded on the left by rowstart.
    -> if padfirst is false the first line is not padded
Severity: Minor
Found in scripts/BioJSON-master/genbank_writer.py - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

There are no issues that match your filters.

Category