BjornFJohansson/pydna

#!/usr/bin/env python3
# -*- coding: utf-8 -*-
# Copyright 2013-2023 by Björn Johansson.  All rights reserved.
# This code is part of the Python-dna distribution and governed by its
# license.  Please see the LICENSE.txt file that should have been included
# as part of this package.
"""This module provide most pydna functionality in the local namespace.

Example
-------

>>> from pydna.all import *
>>> Dseq("aaa")
Dseq(-3)
aaa
ttt
>>> Dseqrecord("aaa")
Dseqrecord(-3)
>>> from pydna.all import __all__
>>> __all__
['Anneal', 'pcr', 'Assembly', 'genbank', 'Genbank', 'download_text\
', 'Dseqrecord', 'Dseq', 'read', 'read_primer', 'parse', 'parse_primers\
', 'ape', 'primer_design', 'assembly_fragments', 'circular_assembly_fragments\
', 'eq', 'gbtext_clean', 'PrimerList']
>>>
"""


__all__ = [
    "Anneal",
    "pcr",
    "Assembly",
    "genbank",
    "Genbank",
    "download_text",
    "Dseqrecord",
    "Dseq",
    "read",
    "read_primer",
    "parse",
    "parse_primers",
    "ape",
    "primer_design",
    "assembly_fragments",
    "circular_assembly_fragments",
    "eq",
    "gbtext_clean",
    "PrimerList",
]


from pydna.amplify import Anneal
from pydna.amplify import pcr
from pydna.assembly import Assembly
from pydna.genbank import genbank
from pydna.genbank import Genbank
from pydna.download import download_text
from pydna.dseqrecord import Dseqrecord
from pydna.dseq import Dseq
from pydna.readers import read
from pydna.readers import read_primer
from pydna.parsers import parse
from pydna.parsers import parse_primers
from pydna.editor import ape
from pydna.design import primer_design
from pydna.design import assembly_fragments
from pydna.design import circular_assembly_fragments
from pydna.utils import eq
from pydna.genbankfixer import gbtext_clean
from pydna.myprimers import PrimerList


if __name__ == "__main__":
    import os as _os

    cached = _os.getenv("pydna_cached_funcs", "")
    _os.environ["pydna_cached_funcs"] = ""
    import doctest

    doctest.testmod(verbose=True, optionflags=doctest.ELLIPSIS)
    _os.environ["pydna_cached_funcs"] = cached