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| README.md | |
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| Rakefile | |
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| bin/transrate | |
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| docs/transrate_logo_full.png | |
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| ext/transrate/extconf.rb | 5 | A 0 mins |
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| ext/transrate/transrate.c | |
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| files.txt | |
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| lib/transrate.rb | 29 | A 0 mins |
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| lib/transrate/assembly.rb | 160 | C 1 day |
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| lib/transrate/cmd.rb | 17 | A 0 mins |
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| lib/transrate/cmdline.rb | 478 | D 2 days |
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| lib/transrate/comparative_metrics.rb | 134 | C 1 day |
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| lib/transrate/contig.rb | 197 | A 3 hrs |
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| lib/transrate/contig_metrics.rb | 48 | A 0 mins |
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| lib/transrate/read_metrics.rb | 202 | B 4 hrs |
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| lib/transrate/salmon.rb | 75 | A 1 hr |
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| lib/transrate/score_optimiser.rb | 62 | A 1 hr |
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| lib/transrate/snap.rb | 142 | B 6 hrs |
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| lib/transrate/transrater.rb | 90 | A 55 mins |
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| lib/transrate/version.rb | 9 | A 0 mins |
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| lib/transrate/writer.rb | 13 | A 0 mins |
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