File versioneer.py has 1416 lines of code (exceeds 250 allowed). Consider refactoring.

Open

# Version: 0.18

"""The Versioneer - like a rocketeer, but for versions.

The Versioneer

File create_acc.py has 772 lines of code (exceeds 250 allowed). Consider refactoring.

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"""create JSON/ACC files for Arbor from a set of BluePyOpt.ephys parameters"""

# pylint: disable=R0914

import io

File models.py has 685 lines of code (exceeds 250 allowed). Consider refactoring.

Open

"""Cell template class"""

"""
Copyright (c) 2016-2020, EPFL/Blue Brain Project

File efeatures.py has 525 lines of code (exceeds 250 allowed). Consider refactoring.

Open

"""eFeature classes"""

"""
Copyright (c) 2016-2020, EPFL/Blue Brain Project

File protocols.py has 525 lines of code (exceeds 250 allowed). Consider refactoring.

Open

"""Protocol classes"""
from .recordings import LFPRecording
from .simulators import LFPySimulator
from .stimuli import LFPStimulus

File biophys.py has 503 lines of code (exceeds 250 allowed). Consider refactoring.

Open

"""Functions to create neuroml biophysiology"""

"""
Copyright (c) 2016-2022, EPFL/Blue Brain Project
 This file is part of BluePyOpt <https://github.com/BlueBrain/BluePyOpt>

File l5pc_analysis.py has 477 lines of code (exceeds 250 allowed). Consider refactoring.

Open

"""Run simple cell optimisation"""

"""
Copyright (c) 2016-2020, EPFL/Blue Brain Project

File locations.py has 475 lines of code (exceeds 250 allowed). Consider refactoring.

Open

"""Location classes"""

"""
Copyright (c) 2016-2020, EPFL/Blue Brain Project

Function define_fitness_calculator has a Cognitive Complexity of 44 (exceeds 5 allowed). Consider refactoring.

Open

def define_fitness_calculator(main_protocol, features_filename, prefix=""):
    """Define fitness calculator"""

    with open(os.path.join(os.path.dirname(__file__), '..', features_filename)) as protocol_file:
        feature_definitions = json.load(protocol_file)

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Function _translate_mech has a Cognitive Complexity of 41 (exceeds 5 allowed). Consider refactoring.

Open

    def _translate_mech(cls, mech_name, mech_params, arb_cats):
        """Translate NMODL mechanism to Arbor ACC format

        Args:
            mech_name (): NMODL mechanism name (suffix)

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Function _generate_parameters has a Cognitive Complexity of 40 (exceeds 5 allowed). Consider refactoring.

Open

def _generate_parameters(parameters, location_order, loc_desc):
    """Create a list of parameters that need to be added to the hoc template"""
    param_locations = defaultdict(list)
    global_params = {}
    for param in parameters:

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File extra_features_utils.py has 407 lines of code (exceeds 250 allowed). Consider refactoring.

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"""Extra features functions"""

"""
Copyright (c) 2016-2020, EPFL/Blue Brain Project

File _version.py has 391 lines of code (exceeds 250 allowed). Consider refactoring.

Open

# This file helps to compute a version number in source trees obtained from
# git-archive tarball (such as those provided by githubs download-from-tag
# feature). Distribution tarballs (built by setup.py sdist) and build
# directories (produced by setup.py build) will contain a much shorter file
# that just contains the computed version number.

File stimuli.py has 362 lines of code (exceeds 250 allowed). Consider refactoring.

Open

"""Stimuli classes"""

"""
Copyright (c) 2016-2020, EPFL/Blue Brain Project

Function create_protocols has a Cognitive Complexity of 31 (exceeds 5 allowed). Consider refactoring.

Open

def create_protocols(protocol_definitions, do_replace_axon=None, sim='nrn'):

    protocols = {}

    if sim == 'nrn':

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File morphologies.py has 334 lines of code (exceeds 250 allowed). Consider refactoring.

Open

"""Morphology classes"""

"""
Copyright (c) 2016-2020, EPFL/Blue Brain Project

File evaluator.py has 333 lines of code (exceeds 250 allowed). Consider refactoring.

Open

"""
Copyright (c) 2016-2020, EPFL/Blue Brain Project

 This file is part of BluePyOpt <https://github.com/BlueBrain/BluePyOpt>

Function define_parameters has a Cognitive Complexity of 26 (exceeds 5 allowed). Consider refactoring.

Open

def define_parameters(params_filename):
    """Define parameters"""

    parameters = []

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File parameters.py has 313 lines of code (exceeds 250 allowed). Consider refactoring.

Open

"""Parameter classes"""

"""
Copyright (c) 2016-2020, EPFL/Blue Brain Project

Function _create_sim_desc has a Cognitive Complexity of 24 (exceeds 5 allowed). Consider refactoring.

Open

    def _create_sim_desc(self, param_values,
                         ignored_globals=(), template=None,
                         disable_banner=False,
                         template_dir=None,
                         extra_params=None,

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