docs/docs/assays.clinical_data.clinical_data_template.html
<!DOCTYPE html>
<html>
<head>
<title>CIDC Schemas</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css" integrity="sha384-ggOyR0iXCbMQv3Xipma34MD+dH/1fQ784/j6cY/iJTQUOhcWr7x9JvoRxT2MZw1T" crossorigin="anonymous">
<style>
.bd-placeholder-img {
font-size: 1.125rem;
text-anchor: middle;
-webkit-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
user-select: none;
}
@media (min-width: 768px) {
.bd-placeholder-img-lg {
font-size: 3.5rem;
}
}
</style>
</head>
<body>
<main role="main">
<div class="container">
<p>
<a href="index.html">CIDC Documentation</a>
</p>
<h1>
Clincal data template
</h1>
<p>
<b>Description:</b> Submission of clinical data for each participant, indexed by CIMAC participant ID.<br>Use 'MISSING' if no CIMAC ID has been assigned.
</p>
</div>
<div class="container">
<div class="accordion" id="Clinical_data_accordion">
<div class="card">
<div class="card-header" id="Clinical_data">
<h2 class="mb-0">
<button class="btn btn-link" type="button" data-toggle="collapse" data-target="#Clinical_data_card" aria-expanded="false" aria-controls="Clinical_data_card">
Worksheet - Clinical data
</button>
</h2>
</div>
<div id="Clinical_data_card" class="collapse" aria-labelledby="Clinical_data" data-parent="#Clinical_data_accordion">
<div class="card-body">
<div class="accordion" id="Clinical_data_preamble_accordion">
<div class="card">
<div class="card-header" id="Clinical_data_preamble">
<h2 class="mb-0">
<button class="btn btn-link" type="button" data-toggle="collapse" data-target="#Clinical_data_preamble_card" aria-expanded="false" aria-controls="Clinical_data_preamble_card">
Preamble Rows
</button>
</h2>
</div>
<div id="Clinical_data_preamble_card" class="collapse" aria-labelledby="Clinical_data_preamble" data-parent="#Clinical_data_preamble_accordion">
<div class="card-body">
<table class="table table-striped">
<thead>
<tr>
<th>Property</th>
<th>Description</th>
<th>Data Type</th>
</tr>
</thead>
<tr>
<td>
<span id="protocol identifier">
protocol identifier
</span>
<br><sup><mark>required</mark></sup>
</td>
<td width=55%>
Trial identifier used by lead organization, ie. Center for Experimental Therapeutics Program (CTEP) ID or Industry Sponsored ID. This is usually a short identifier. Example: E4412.
</td>
<td>
<
string
>
</td>
</tr>
<tr>
<td>
<span id="assay creator">
assay creator
</span>
<br><sup><mark>required</mark></sup>
</td>
<td width=55%>
Indicates what site is filling out the assay.
</td>
<td>
<
string
>
<ul>
<li>"DFCI"</li>
<li>"Mount Sinai"</li>
<li>"Stanford"</li>
<li>"MD Anderson"</li>
<li>"Adaptive"</li>
<li>"Broad"</li>
</ul>
</td>
</tr>
</table>
</div>
</div>
</div>
</div>
<div class="accordion" id="Clinical_data_body_accordion">
<div class="card">
<div class="card-header" id="Clinical_data_body">
<h2 class="mb-0">
<button class="btn btn-link" type="button" data-toggle="collapse" data-target="#Clinical_data_body_card" aria-expanded="false" aria-controls="Clinical_data_body_card">
Data Columns
</button>
</h2>
</div>
<div id="Clinical_data_body_card" class="collapse" aria-labelledby="Clinical_data_body" data-parent="#Clinical_data_body_accordion">
<div class="card-body">
<h5 class="text-muted">Unharmonized</h4>
<table class="table table-striped">
<thead>
<tr>
<th>Property</th>
<th>Description</th>
<th>Data Type</th>
</tr>
</thead>
<tr>
<td>
<span id="File name">
File name
</span>
<br><sup><mark>required</mark></sup>
</td>
<td width=55%>
</td>
<td>
<
string
>
</td>
</tr>
<tr>
<td>
<span id="File Type">
File Type
</span>
<br><sup><mark>required</mark></sup>
</td>
<td width=55%>
</td>
<td>
<
string
>
<ul>
<li>"xlsx"</li>
<li>"csv"</li>
<li>"docx"</li>
</ul>
</td>
</tr>
<tr>
<td>
<span id="Clinical data file">
Clinical data file
</span>
<br><sup><mark>required</mark></sup>
</td>
<td width=55%>
A non-harmonized clinical data file.
</td>
<td>
<a href="local_file.html#file_path">
local file#file path
</a>
</td>
</tr>
<tr>
<td>
<span id="Comment">
Comment
</span>
<br><sup><mark>required</mark></sup>
</td>
<td width=55%>
A text comment regarding this file.
</td>
<td>
<
string
>
</td>
</tr>
</table>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</main>
<script src="https://code.jquery.com/jquery-3.3.1.slim.min.js" integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo" crossorigin="anonymous"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.7/umd/popper.min.js" integrity="sha384-UO2eT0CpHqdSJQ6hJty5KVphtPhzWj9WO1clHTMGa3JDZwrnQq4sF86dIHNDz0W1" crossorigin="anonymous"></script>
<script src="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/js/bootstrap.min.js" integrity="sha384-JjSmVgyd0p3pXB1rRibZUAYoIIy6OrQ6VrjIEaFf/nJGzIxFDsf4x0xIM+B07jRM" crossorigin="anonymous"></script>
</body>
</html>