docs/docs/assays.misc_data.misc_data_template.html
<!DOCTYPE html>
<html>
<head>
<title>CIDC Schemas</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css" integrity="sha384-ggOyR0iXCbMQv3Xipma34MD+dH/1fQ784/j6cY/iJTQUOhcWr7x9JvoRxT2MZw1T" crossorigin="anonymous">
<style>
.bd-placeholder-img {
font-size: 1.125rem;
text-anchor: middle;
-webkit-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
user-select: none;
}
@media (min-width: 768px) {
.bd-placeholder-img-lg {
font-size: 3.5rem;
}
}
</style>
</head>
<body>
<main role="main">
<div class="container">
<p>
<a href="index.html">CIDC Documentation</a>
</p>
<h1>
Miscellaneous data template
</h1>
<p>
<b>Description:</b> Submission of data that isn't supported by any other template.
</p>
</div>
<div class="container">
<div class="accordion" id="Misc_accordion">
<div class="card">
<div class="card-header" id="Misc">
<h2 class="mb-0">
<button class="btn btn-link" type="button" data-toggle="collapse" data-target="#Misc_card" aria-expanded="false" aria-controls="Misc_card">
Worksheet - Misc
</button>
</h2>
</div>
<div id="Misc_card" class="collapse" aria-labelledby="Misc" data-parent="#Misc_accordion">
<div class="card-body">
<div class="accordion" id="Misc_preamble_accordion">
<div class="card">
<div class="card-header" id="Misc_preamble">
<h2 class="mb-0">
<button class="btn btn-link" type="button" data-toggle="collapse" data-target="#Misc_preamble_card" aria-expanded="false" aria-controls="Misc_preamble_card">
Preamble Rows
</button>
</h2>
</div>
<div id="Misc_preamble_card" class="collapse" aria-labelledby="Misc_preamble" data-parent="#Misc_preamble_accordion">
<div class="card-body">
<table class="table table-striped">
<thead>
<tr>
<th>Property</th>
<th>Description</th>
<th>Data Type</th>
</tr>
</thead>
<tr>
<td>
<span id="protocol identifier">
protocol identifier
</span>
<br><sup><mark>required</mark></sup>
</td>
<td width=55%>
Trial identifier used by lead organization, ie. Center for Experimental Therapeutics Program (CTEP) ID or Industry Sponsored ID. This is usually a short identifier. Example: E4412.
</td>
<td>
<
string
>
</td>
</tr>
<tr>
<td>
<span id="assay creator">
assay creator
</span>
<br><sup><mark>required</mark></sup>
</td>
<td width=55%>
Indicates what site is filling out the assay.
</td>
<td>
<
string
>
<ul>
<li>"DFCI"</li>
<li>"Mount Sinai"</li>
<li>"Stanford"</li>
<li>"MD Anderson"</li>
<li>"Adaptive"</li>
<li>"Broad"</li>
</ul>
</td>
</tr>
</table>
</div>
</div>
</div>
</div>
<div class="accordion" id="Misc_body_accordion">
<div class="card">
<div class="card-header" id="Misc_body">
<h2 class="mb-0">
<button class="btn btn-link" type="button" data-toggle="collapse" data-target="#Misc_body_card" aria-expanded="false" aria-controls="Misc_body_card">
Data Columns
</button>
</h2>
</div>
<div id="Misc_body_card" class="collapse" aria-labelledby="Misc_body" data-parent="#Misc_body_accordion">
<div class="card-body">
<h5 class="text-muted">Files</h4>
<table class="table table-striped">
<thead>
<tr>
<th>Property</th>
<th>Description</th>
<th>Data Type</th>
</tr>
</thead>
<tr>
<td>
<span id="file name">
file name
</span>
<br><sup><mark>required</mark></sup>
</td>
<td width=55%>
A (short) name of the file
</td>
<td>
<
string
>
</td>
</tr>
<tr>
<td>
<span id="description">
description
</span>
</td>
<td width=55%>
An optional long string describing the file, its purpose, and/or its content.
</td>
<td>
<
string
>
</td>
</tr>
<tr>
<td colspan=3 class="container">
<div class="accordion" id="file_location_accordion">
<div class="card">
<div class="card-header" id="file_location">
<div class="mb-0">
<button class="btn btn-link" type="button" data-toggle="collapse" data-target="#file_location_card" aria-expanded="false" aria-controls="file_location_card">
file location
</button>
<sup><mark>required</mark></sup>
<div style="float: right;">
<
>
</div>
</div>
</div>
<div id="file_location_card" class="collapse" aria-labelledby="file_location">
<div class="card-body">
Path to file, relative to the intake bucket.
<br>
All files are
<sup><mark>required</mark></sup>
<br>
<table class="table table-striped">
<thead>
<tr>
<th>File name</th>
<th>Description</th>
<th>Data Type</th>
</tr>
</thead>
<tr>
<td>
file
</td>
<td width=55%>
Information about a generic file.
</td>
<td>
<a href="files.file.html">
file
</a>
</td>
</tr>
<tr>
<td>
file_location
</td>
<td width=55%>
The local file location for determining where the file is coming from
</td>
<td>
<
string
>
</td>
</tr>
</table>
</div>
</div>
</div>
</div>
</td>
</tr>
</table>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</main>
<script src="https://code.jquery.com/jquery-3.3.1.slim.min.js" integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo" crossorigin="anonymous"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.7/umd/popper.min.js" integrity="sha384-UO2eT0CpHqdSJQ6hJty5KVphtPhzWj9WO1clHTMGa3JDZwrnQq4sF86dIHNDz0W1" crossorigin="anonymous"></script>
<script src="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/js/bootstrap.min.js" integrity="sha384-JjSmVgyd0p3pXB1rRibZUAYoIIy6OrQ6VrjIEaFf/nJGzIxFDsf4x0xIM+B07jRM" crossorigin="anonymous"></script>
</body>
</html>