CIMAC-CIDC/cidc-schemas

View on GitHub
template_examples/csvs/wes_analysis_template__Legend.csv

Summary

Maintainability
Test Coverage
"","LEGEND"
"","Legend for tab 'WES Analysis'"
"","Protocol identifier","String","Trial identifier used by lead organization, ie. Center for Experimental Therapeutics Program (CTEP) ID or Industry Sponsored ID.  This is usually a short identifier. Example: E4412."
"","Folder","String"
"","Section 'WES Runs' of tab 'WES Analysis'"
"","Run id","String","An id used for a paired analysis run."
"","Normal cimac id","String: regex ^C[A-Z0-9]{3}[A-Z0-9]{3}[A-Z0-9]{2}.[0-9]{2}$ ","Specimen identifier assigned by the CIMAC-CIDC Network. Formatted as C????????.??","E.g. 'CTTTP01A1.00'"
"","Tumor cimac id","String: regex ^C[A-Z0-9]{3}[A-Z0-9]{3}[A-Z0-9]{2}.[0-9]{2}$ ","Specimen identifier assigned by the CIMAC-CIDC Network. Formatted as C????????.??","E.g. 'CTTTP01A1.00'"
"","Comments","String","Comments on the paired analysis run."
"","Legend for tab 'Excluded Samples'"
"","Section 'Samples Excluded From Analysis' of tab 'Excluded Samples'"
"","Cimac id","String: regex ^C[A-Z0-9]{3}[A-Z0-9]{3}[A-Z0-9]{2}.[0-9]{2}$ ","Specimen identifier assigned by the CIMAC-CIDC Network. Formatted as C????????.??","E.g. 'CTTTP01A1.00'"
"","Reason","String","A comment describing why this sample is missing from the pipeline output."