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docs/source/conf.py

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# -*- coding: utf-8 -*-
# flake8: noqa
#
# Dallinger documentation build configuration file, created by
# sphinx-quickstart on Wed Aug 10 14:50:29 2016.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
import os
import sys

here = os.path.dirname(os.path.abspath(__file__))
src = os.path.abspath(os.path.join(here, "..", ".."))
js_source_path = os.path.join(src, "dallinger", "frontend", "static", "scripts")
sys.path.insert(0, src)

# Add path for node binaries
os.environ["PATH"] = (
    os.environ.get("PATH", "") + ":" + os.path.join(src, "node_modules", ".bin")
)

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    "sphinx.ext.autodoc",
    "sphinx.ext.autosectionlabel",
    "sphinx.ext.intersphinx",
    "sphinx.ext.viewcode",
    "sphinx.ext.napoleon",
    "myst_parser",
]

# Hack to make sphinx_js work with python 3.10
import collections
import collections.abc

if not hasattr(collections, "Mapping"):
    collections.Mapping = collections.abc.Mapping

try:
    import sphinxcontrib.spelling
except ImportError:
    pass
else:
    sphinxcontrib.spelling  # to satisfy flake8
    extensions.append("sphinxcontrib.spelling")

# Add any paths that contain templates here, relative to this directory.
# templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = ".rst"

# The encoding of source files.
#
# source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = "index"

# General information about the project.
project = "Dallinger"
copyright = "2018, Dallinger Development Team"
author = "Dallinger Development Team"

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
# version = u'5.0.1'
from dallinger.version import __version__ as version

# The full version, including alpha/beta/rc tags.
# release = u'5.0.1'
release = version

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = "en"

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#
# today = ''
#
# Else, today_fmt is used as the format for a strftime call.
#
# today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = []

# The reST default role (used for this markup: `text`) to use for all
# documents.
#
# default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#
# add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#
# add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#
# show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = "sphinx"

# A list of ignored prefixes for module index sorting.
# modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
# keep_warnings = False

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = False


# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
#
html_theme = "sphinx_rtd_theme"
html_theme_path = [
    "_themes",
]

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#
html_theme_options = {
    #    'logo_name': True,
    "canonical_url": "",
    "analytics_id": "",
    "display_version": True,
    "prev_next_buttons_location": "bottom",
    "style_external_links": True,
    # Toc options
    "collapse_navigation": True,
    "sticky_navigation": True,
    "navigation_depth": 4,
    "includehidden": False,
    "titles_only": False,
}
html_context = {
    "display_github": True,  # Integrate GitHub
    "github_user": "Dallinger",  # Username
    "github_repo": "Dallinger",  # Repo name
    "github_version": "master",  # Version
    "conf_py_path": "/docs/source/",  # Path in the checkout to the docs root
}
# html_theme_options = {
#      'logo_name': True,
#      'display_github': True,
#      'github_user': 'Dallinger',
#      'github_repo': 'Dallinger',
#      'github_type': 'star',
#      'github_button': False,
#      'github_banner': "corner.jpg",
#      'travis_button': False,
#      'description': 'Laboratory automation for the behavioral and social sciences.',
#      'show_powered_by': False,
# }

# Add any paths that contain custom themes here, relative to this directory.
# html_theme_path = []

# The name for this set of Sphinx documents.
# "<project> v<release> documentation" by default.
#
# html_title = u'Dallinger v5.0.1'

# A shorter title for the navigation bar.  Default is the same as html_title.
#
# html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#
# html_logo = '_static/grid_small.png'

# The name of an image file (relative to this directory) to use as a favicon of
# the docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#
# html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ["_static"]

# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the documentation.
#
# html_extra_path = []

# If not None, a 'Last updated on:' timestamp is inserted at every page
# bottom, using the given strftime format.
# The empty string is equivalent to '%b %d, %Y'.
#
# html_last_updated_fmt = None

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#
html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#
# html_sidebars = {
#     '**': [
#         # 'about.html',
#         # 'navigation.html',
#         'relations.html',
#         # 'searchbox.html',
#         'donate.html',
#     ]
# }

# Additional templates that should be rendered to pages, maps page names to
# template names.
#
# html_additional_pages = {}

# If false, no module index is generated.
#
# html_domain_indices = True

# If false, no index is generated.
#
# html_use_index = True

# If true, the index is split into individual pages for each letter.
#
# html_split_index = False

# If true, links to the reST sources are added to the pages.
#
html_show_sourcelink = False

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#
html_show_sphinx = False

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#
html_show_copyright = False

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#
# html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
# html_file_suffix = None

# Language to be used for generating the HTML full-text search index.
# Sphinx supports the following languages:
#   'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja'
#   'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh'
#
# html_search_language = 'en'

# A dictionary with options for the search language support, empty by default.
# 'ja' uses this config value.
# 'zh' user can custom change `jieba` dictionary path.
#
# html_search_options = {'type': 'default'}

# The name of a javascript file (relative to the configuration directory) that
# implements a search results scorer. If empty, the default will be used.
#
# html_search_scorer = 'scorer.js'

# Output file base name for HTML help builder.
htmlhelp_basename = "Dallingerdoc"

# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',
    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',
    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',
    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (
        master_doc,
        "Dallinger.tex",
        "Dallinger Documentation",
        "Dallinger Development Team",
        "manual",
    ),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#
# latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#
# latex_use_parts = False

# If true, show page references after internal links.
#
# latex_show_pagerefs = False

# If true, show URL addresses after external links.
#
# latex_show_urls = False

# Documents to append as an appendix to all manuals.
#
# latex_appendices = []

# It false, will not define \strong, \code,     itleref, \crossref ... but only
# \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added
# packages.
#
# latex_keep_old_macro_names = True

# If false, no module index is generated.
#
# latex_domain_indices = True


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [(master_doc, "dallinger", "Dallinger Documentation", [author], 1)]

# If true, show URL addresses after external links.
#
# man_show_urls = False


# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (
        master_doc,
        "Dallinger",
        "Dallinger Documentation",
        author,
        "Dallinger",
        "One line description of project.",
        "Miscellaneous",
    ),
]

# Documents to append as an appendix to all manuals.
#
# texinfo_appendices = []

# If false, no module index is generated.
#
# texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#
# texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
#
# texinfo_no_detailmenu = False

# -- Install demo files -------------------------------------------

import os
import sys

root = os.path.abspath(os.path.dirname(__file__))
sys.path.append(root)

import build_demo_docs

static = build_demo_docs.build(root)
html_static_path.extend(static)


def setup(app):
    app.add_css_file("custom.css")  # html_static_path is automatically prepended