Avoid deeply nested control flow statements.

Open

                    if edge[0] in msgs_in_range and edge[1] in msgs_in_range:
                        discussion_graph.add_edge(*edge)
            edge_file.close()

Function generate_hyperedge_distribution has 6 arguments (exceeds 4 allowed). Consider refactoring.

Open

def generate_hyperedge_distribution(nodelist_filename, edgelist_filename, clean_headers_filename, foldername, time_limit=None, ignore_lat=False):

Function remove_duplicate_headers has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.

Open

    def remove_duplicate_headers(self,to_remove=duplicate_uid, json_headers="headers.json", output_file="headers.json"):
        """

        This function removes all the duplicate entries of the UIDs specified in the to_remove parameter. By default,
        it removes all the duplicate entries in the JSON file.

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Avoid deeply nested control flow statements.

Open

                    if json_obj['Time'] < time_limit:
                        # print("\nFrom", json_obj['From'], "\nTo", json_obj['To'], "\nCc", json_obj['Cc'])
                        from_addr = email_re.search(json_obj['From'])
                        json_obj['From'] = from_addr.group(0) if from_addr is not None else json_obj['From']
                        json_obj['To'] = set(email_re.findall(json_obj['To']))

Avoid deeply nested control flow statements.

Open

                        if not console_output:
                            out_file.write(author_email + "\n")
                            author_features = list()
                            for i in indices:
                                author_features.append(feature_names[i])

Function vertex_clustering has 6 arguments (exceeds 4 allowed). Consider refactoring.

Open

def vertex_clustering(json_filename, nodelist_filename, edgelist_filename, foldername, time_limit=None, ignore_lat=False):

Avoid deeply nested control flow statements.

Open

                    if to_addr not in author_map:
                        author_map[to_addr] = index
                        author_graph.add_vertex(name=to_addr, label=to_addr)
                        index += 1
                    if author_graph[node['From'], to_addr] == 0:

Function test_generate_rt_curve_fits has 6 arguments (exceeds 4 allowed). Consider refactoring.

Open

def test_generate_rt_curve_fits(mock_figure, mock_plot, mock_legend, mock_ylabel, mock_xlabel, mock_savefig):

Avoid deeply nested control flow statements.

Open

                    if not jfile['References'] == "":
                        # The references are stored as a comma separated string. We have to split it at the ',' to get a list.
                        if ref_toggle:
                            ref_list = jfile['References'].split(',')
                        else:

Avoid deeply nested control flow statements.

Open

                        if console_output:
                            print("\n-----\n")
                        else:
                            out_file.write("\n-----\n")
        else:

Function add_to_weighted_graph has 5 arguments (exceeds 4 allowed). Consider refactoring.

Open

def add_to_weighted_graph(graph_obj, discussion_graph, json_data, nbunch, node_enum=list()):

Function get has 5 arguments (exceeds 4 allowed). Consider refactoring.

Open

def get(json_filename, output_filename, active_score, passive_score, write_to_file=True):

Function add_to_multigraph has 5 arguments (exceeds 4 allowed). Consider refactoring.

Open

def add_to_multigraph(graph_obj, discussion_graph, json_data, nbunch, label_prefix=''):

Function generate_kmeans_clustering has 5 arguments (exceeds 4 allowed). Consider refactoring.

Open

def generate_kmeans_clustering(mbox_filename, output_filename, author_uid_filename, json_filename, top_n = None):

Function generate_wh_table_authors has 5 arguments (exceeds 4 allowed). Consider refactoring.

Open

def generate_wh_table_authors(nodelist_filename, edgelist_filename, output_filename, ignore_lat=False, time_limit=None):

Function author_interaction has 5 arguments (exceeds 4 allowed). Consider refactoring.

Open

def author_interaction(clean_data, graph_nodes, graph_edges, pajek_file, ignore_lat=True):

Function replace_invalid_headers has 5 arguments (exceeds 4 allowed). Consider refactoring.

Open

    def replace_invalid_headers(self,to_replace=invalid_uid, json_headers="headers.json", output_file="headers.json", unwanted_uid_filename="unwanted_uid.txt", uid_map_filename="thread_uid_map.json"):

Function generate_wh_table_threads has 5 arguments (exceeds 4 allowed). Consider refactoring.

Open

def generate_wh_table_threads(nodelist_filename, edgelist_filename, output_filename, ignore_lat=False, time_limit=None):

Function weighted_multigraph has 5 arguments (exceeds 4 allowed). Consider refactoring.

Open

def weighted_multigraph(graph_nodes, graph_edges, clean_data, output_dir, ignore_lat = False):

Function write_uid_map has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.

Open

    def write_uid_map(self,from_index=1, to_index=last_uid_read, uid_map_filename="thread_uid_map.json"):
        """
    
        To ensure that references are correctly recorded in the JSON file such that there are no references to mails that
        do not exist and to ease the processing of headers, a map with the string in the Message-Id field of the header to

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