blast/docs/color_schema.html
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<title>BLAST Color schema description</title>
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<CENTER><h1>BLAST Color schema description</h1></CENTER>
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<LI> Color schema 1:
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<LI> masked regions in lower case
<LI> everything else in upper case
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<LI> Color schema 2:
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<LI> masked regions in lower case, gray letters
<LI> Unaligned regions in italic
<LI> everything else in upper case
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<LI> Color schema 3:
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<LI> No middle line.
<LI> Masked regions in lower case, gray letters unless identity
<LI> Everything else in upper case
<LI> Unaligned regions in italic
<LI> Identity shown in red color
<LI> Similarity shown in blue color
<LI> Mismatches shown in black color
</UL>
<LI> Color schema 4:
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<LI> No middle line.
<LI> Masked regions in lower case, gray letters
<LI> Everything else in upper case
<LI> Unaligned regions in italic
<LI> Identity shown in blue color
<LI> Similarity shown in brown color
<LI> Mismatches shown in red color
</UL>
<LI> Color schema 5:
<UL>
<LI> No middle line.
<LI> Masked regions in lower case, gray letters
<LI> Everything else in upper case
<LI> Unaligned regions in italic
<LI> Identity shown in red color
<LI> Similarity shown in blue color
<LI> Mismatches shown in black color
</UL>
<LI> Color schema 6:
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<LI> No middle line.
<LI> Masked regions in lower case, gray letters unless identity
<LI> Everything else in upper case
<LI> Unaligned regions in italic
<LI> Identity shown in red bold color
<LI> Similarity shown in blue color
<LI> Mismatches shown in gray color
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<!-- Created: Tue May 16 13:07:50 EDT 2000 -->
<!-- Created by: <a href="mailto:shavirin@ncbi.nlm.nih.gov">Sergey Shavirin</a> -->
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Last modified: Tue May 16 16:18:28 EDT 2000
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