| environment.rb | 50 | A 0 mins |
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| helpers.rb | 40 | A 25 mins |
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| java/CosineCalc.java | 188 | B 4 hrs |
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| java/README.md | |
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| lib/seabase.rb | 23 | A 0 mins |
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| lib/seabase/blast_cgi.rb | 47 | A 0 mins |
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| lib/seabase/cosine_similarity.rb | 22 | A 0 mins |
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| lib/seabase/errors.rb | 5 | A 0 mins |
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| lib/seabase/gephi_csv_builder.rb | 24 | A 0 mins |
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| lib/seabase/gephi_exporter.rb | 48 | A 0 mins |
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| lib/seabase/gephi_gexf_builder.rb | 51 | A 0 mins |
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| lib/seabase/normalizer.rb | 102 | A 0 mins |
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| lib/seabase/set_lookup.rb | 32 | A 0 mins |
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| lib/seabase/transcript_context.rb | 27 | A 0 mins |
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| lib/seabase/version.rb | 6 | A 0 mins |
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| models/condition.rb | 2 | A 0 mins |
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| models/external_match.rb | 5 | A 0 mins |
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| models/external_name.rb | 51 | A 0 mins |
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| models/external_source.rb | 2 | A 0 mins |
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| models/gephi_import.rb | 26 | A 0 mins |
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| models/gephi_record.rb | 3 | A 0 mins |
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| models/mapping_count.rb | 4 | A 0 mins |
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| models/news_post.rb | 6 | A 0 mins |
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| models/normalized_counts.rb | 3 | A 0 mins |
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| models/replicate.rb | 11 | A 0 mins |
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| models/role.rb | 4 | A 0 mins |
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| models/roles_user.rb | 4 | A 0 mins |
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| models/taxon.rb | 10 | A 0 mins |
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| models/trace.rb | 7 | A 0 mins |
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| models/transcript.rb | 31 | A 0 mins |
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| models/user.rb | 11 | A 0 mins |
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| public/favicon.ico | |
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| public/nematostella_0h.csv | |
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| public/nematostella_1h.csv | |
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| routes.rb | 249 | A 25 mins |
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| scripts/cosine_similarity.rb | 56 | A 35 mins |
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| scripts/gephi_export.rb | 28 | A 0 mins |
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| scripts/normalize_data.rb | 31 | A 0 mins |
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| scripts/transcripts_data.rb | 36 | A 0 mins |
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| technical_files/README.md | |
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| technical_files/TODO | |
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| technical_files/fold_plot_data.json | |
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| technical_files/query-translations.txt | |
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| technical_files/t.rb | 13 | A 0 mins |
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| technical_files/test_set | |
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| views/blast.haml | |
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| views/blast_result.haml | |
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| views/chart_and_table.haml | |
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| views/export.haml | |
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| views/external_name.haml | |
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