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<center><h1 id="ensembl-hive">eHive documentation</h1></center>
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<p>eHive (EnsEMBL Hive) is a system for running computation pipelines on distributed computing resources - clusters, farms or grids.
The name "Hive" comes from the way pipelines are processed by a swarm of autonomous agents.</p>
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<li>Introduction to eHive: <a href="presentations/HiveWorkshop_Sept2013/index.html">Sept. 2013 workshop</a> (parts <a href="presentations/HiveWorkshop_Sept2013/Slides_part1.pdf">1</a>, <a href="presentations/HiveWorkshop_Sept2013/Slides_part2.pdf">2</a> and <a href="presentations/HiveWorkshop_Sept2013/Slides_part3.pdf">3</a> in PDF)</li>
<li><a href="install.html">Dependencies, installation and setup</a></li>
<li><a href="running_eHive_pipelines.html">Running eHive pipelines</a></li>
<li><a href="long_mult_walkthrough/long_mult_walkthrough.html">Long Multiplication pipeline walkthrough (with lots of pictures)</a></li>
<li><a href="MPI_howto.md">How to run MPI applications with eHive</a></li>
<li><a href="hive_schema.html">Database schema</a></li>
<li><a href="doxygen/index.html">API Doxygen documentation</a></li>
<li><a href="../wrappers/python3/doxygen/index.html">Python Doxygen documentation (still in beta)</a></li>
<li class="tree">eHive scripts<br>
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<span class="tree">│ </span><em>Execution</em><br>
<span class="tree">├── </span><a href="scripts/init_pipeline.html">init_pipeline</a><br>
<span class="tree">├── </span><a href="scripts/seed_pipeline.html">seed_pipeline</a><br>
<span class="tree">├── </span><a href="scripts/beekeeper.html">beekeeper</a><br>
<span class="tree">│ </span><em>Debugging</em><br>
<span class="tree">├── </span><a href="scripts/runWorker.html">runWorker</a><br>
<span class="tree">├── </span><a href="scripts/db_cmd.html">db_cmd</a><br>
<span class="tree">├── </span><a href="scripts/standaloneJob.html">standaloneJob</a><br>
<span class="tree">├── </span><a href="scripts/hoover_pipeline.html">hoover_pipeline</a><br>
<span class="tree">│ </span><em>Reporting</em><br>
<span class="tree">├── </span><a href="scripts/generate_graph.html">generate_graph</a><br>
<span class="tree">├── </span><a href="scripts/load_resource_usage.html">load_resource_usage</a><br>
<span class="tree">└── </span><a href="scripts/generate_timeline.html">generate_timeline</a><br>
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<center><h2 id="contact-us-mailing-list">Contact us (mailing list)</h2></center>
<p>eHive was originally conceived and used within EnsEMBL Compara group for running Comparative Genomics pipelines, but since then it has been separated into a separate software tool and is used in many projects both in Genome Campus, Cambridge and outside.
There is <a href="http://listserver.ebi.ac.uk/mailman/listinfo/ehive-users">eHive users' mailing list</a> for questions, suggestions, discussions and announcements.</p>
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