modules/Bio/EnsEMBL/Hive/Examples/SystemCmd/PipeConfig/AnyCommands_conf.pm
=pod
=head1 NAME
Bio::EnsEMBL::Hive::Examples::SystemCmd::PipeConfig::AnyCommands_conf
=head1 SYNOPSIS
init_pipeline.pl Bio::EnsEMBL::Hive::Examples::SystemCmd::PipeConfig::AnyCommands_conf -password <your_password>
seed_pipeline.pl -url $HIVE_URL -logic_name perform_cmd -input_id "{'cmd' => 'gzip pdfs/RondoAllaTurca_Mozart_Am.pdf; sleep 5'}"
runWorker.pl -url $HIVE_URL
seed_pipeline.pl -url $HIVE_URL -logic_name perform_cmd -input_id "{'cmd' => 'gzip -d pdfs/RondoAllaTurca_Mozart_Am.pdf.gz ; sleep 4'}"
runWorker.pl -url $HIVE_URL
=head1 DESCRIPTION
This is the smallest Hive pipeline example possible.
The pipeline has only one analysis, which can run any shell command defined in each job by setting its 'cmd' parameter.
=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-2021] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software distributed under the License
is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and limitations under the License.
=head1 CONTACT
Please subscribe to the Hive mailing list: http://listserver.ebi.ac.uk/mailman/listinfo/ehive-users to discuss Hive-related questions or to be notified of our updates
=cut
package Bio::EnsEMBL::Hive::Examples::SystemCmd::PipeConfig::AnyCommands_conf;
use strict;
use warnings;
use base ('Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf');
sub pipeline_analyses {
return [
{ -logic_name => 'perform_cmd',
-module => 'Bio::EnsEMBL::Hive::RunnableDB::SystemCmd',
},
];
}
1;