Ensembl/ensembl-hive

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sql/patch_2016-02-26.mysql

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-- ---------------------------------------------------------------------------------------------------

SET @expected_version = 78;

    -- make MySQL stop immediately after it encounters division by zero:
SET SESSION sql_mode='TRADITIONAL';

    -- warn that we detected the schema version mismatch:
SELECT CONCAT(  'The patch only applies to schema version ',
                @expected_version,
                ', but the current schema version is ',
                meta_value,
                ', so skipping the rest.') AS ''
    FROM hive_meta WHERE meta_key='hive_sql_schema_version' AND meta_value<>@expected_version;

    -- cause division by zero only if current version differs from the expected one:
INSERT INTO hive_meta (meta_key, meta_value)
    SELECT 'this_should_never_be_inserted', 1 FROM hive_meta WHERE NOT 1/(meta_key<>'hive_sql_schema_version' OR meta_value=@expected_version);

SELECT CONCAT(  'The patch seems to be compatible with schema version ',
                @expected_version,
                ', applying the patch...') AS '';

    -- Now undo the change so that we could patch potentially non-TRADITIONAL schema:
SET SESSION sql_mode='';

-- ----------------------------------<actual_patch> -------------------------------------------------

-- going back to the ENUM since it is much more efficiently indexed:

ALTER TABLE job  MODIFY COLUMN  status  ENUM('SEMAPHORED','READY','CLAIMED','COMPILATION','PRE_CLEANUP','FETCH_INPUT','RUN','WRITE_OUTPUT','POST_HEALTHCHECK','POST_CLEANUP','DONE','FAILED','PASSED_ON') DEFAULT 'READY' NOT NULL;

-- ----------------------------------</actual_patch> -------------------------------------------------


    -- increase the schema version by one:
UPDATE hive_meta SET meta_value=meta_value+1 WHERE meta_key='hive_sql_schema_version';