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Ensembl/ensembl-hive

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t/04.meadow/fake_bin/bjobs

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#!/bin/bash

read -r -d '' bjobs_header << EOF
JOBID   USER    STAT  QUEUE      FROM_HOST   EXEC_HOST   JOB_NAME   SUBMIT_TIME
EOF

read -r -d '' bjobs_content << EOF
6388676 jt8     RUN   basement   farm3-head2 12*bc-27-1- *filter.fa Oct 19 15:29
1997948 tc9     RUN   normal     bc-27-1-15  16*bc-27-1- *agle.1.72 Nov 16 10:25
2067769 il4     RUN   normal     farm3-head1 bc-25-1-08  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[9] Nov 16 22:42
2067769 il4     RUN   normal     farm3-head1 bc-25-1-08  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[10] Nov 16 22:42
2067769 il4     RUN   normal     farm3-head1 bc-25-1-08  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[11] Nov 16 22:42
2067769 il4     RUN   normal     farm3-head1 bc-25-1-08  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[12] Nov 16 22:42
2067769 il4     RUN   normal     farm3-head1 bc-25-1-08  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[13] Nov 16 22:42
2037301 il4     RUN   yesterday  farm3-head1 bc-25-1-13  bash       Nov 16 15:44
2067769 il4     RUN   normal     farm3-head1 bc-27-2-11  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[8] Nov 16 22:42
2067754 il4     RUN   normal     farm3-head1 bc-26-3-02  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-338[26] Nov 16 22:40
2067754 il4     RUN   normal     farm3-head1 bc-26-3-02  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-338[27] Nov 16 22:40
2067754 il4     RUN   normal     farm3-head1 bc-26-3-02  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-338[28] Nov 16 22:40
2067754 il4     RUN   normal     farm3-head1 bc-26-3-02  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-338[30] Nov 16 22:40
2067754 il4     RUN   normal     farm3-head1 bc-26-3-02  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-338[31] Nov 16 22:40
2067754 il4     RUN   normal     farm3-head1 bc-26-3-02  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-338[32] Nov 16 22:40
2067754 il4     RUN   normal     farm3-head1 bc-26-3-02  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-338[33] Nov 16 22:40
2067754 il4     RUN   normal     farm3-head1 bc-26-3-02  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-338[34] Nov 16 22:40
2067765 il4     RUN   normal     farm3-head1 bc-32-1-07  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-339[4] Nov 16 22:41
2067765 il4     RUN   normal     farm3-head1 bc-25-2-04  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-339[13] Nov 16 22:41
2068245 mm14    RUN   normal     farm3-head1 2*bc-29-3-08 tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_30GB_2cpu-359 Nov 16 23:01
2068410 il4     PEND  normal     farm3-head1 2*bc-29-3-08 tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_30GB_2cpu-362 Nov 16 23:04
2067769 il4     RUN   normal     farm3-head1 bc-27-3-12  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[14] Nov 16 22:42
2067769 il4     RUN   normal     farm3-head1 bc-27-3-12  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[15] Nov 16 22:42
2068463 mm14    PEND  normal     farm3-head1 2*bc-31-3-05 tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_30GB_2cpu-364 Nov 16 23:06
2067754 il4     RUN   normal     farm3-head1 bc-30-3-11  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-338[14] Nov 16 22:40
2068349 il4     RUN   normal     farm3-head1 2*bc-31-1-16 tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_30GB_2cpu-361[2] Nov 16 23:03
2067769 il4     RUN   normal     farm3-head1 bc-27-2-15  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[16] Nov 16 22:42
2067769 il4     PEND  normal     farm3-head1 bc-27-2-15  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[17] Nov 16 22:42
2067769 il4     PEND  normal     farm3-head1 bc-27-2-15  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[18] Nov 16 22:42
2067769 il4     PEND  normal     farm3-head1 bc-27-2-15  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[19] Nov 16 22:42
2067769 il4     PEND  normal     farm3-head1 bc-31-3-03  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[6] Nov 16 22:42
2067769 il4     PEND  normal     farm3-head1 bc-26-2-01  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[3] Nov 16 22:42
2067769 il4     PEND  normal     farm3-head1 bc-26-2-01  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[4] Nov 16 22:42
2067769 il4     PEND  normal     farm3-head1 bc-26-2-01  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[5] Nov 16 22:42
2068349 il4     RUN   normal     farm3-head1 2*bc-31-2-08 tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_30GB_2cpu-361[1] Nov 16 23:03
2067754 il4     RUN   normal     farm3-head1 bc-29-3-02  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-338[7] Nov 16 22:40
2067769 il4     RUN   normal     farm3-head1 bc-26-2-04  tracking_homo_sapiens_funcgen_81_38_hive-Hive-normal_10gb-340[2] Nov 16 22:42
276335[13] tmpseq RUN verylong   node5005    node1322    tracking_homo_sapiens_funcgen_81_38_hive-Hive-verylong_rc-1[13] Jan 27 22:08
EOF

USER_FILTER=all
JOB_NAME=
JOB_ID=

while [ "$1" != "" ]; do
    case $1 in
        -J)
            JOB_NAME=$2
            shift
            ;;
        -u)
            USER_FILTER=$2
            shift
            ;;
        -w)
            ;;
        *)
            JOB_ID=$1
            ;;
    esac
    shift
done

echo "$bjobs_header"
if [ "x$JOB_ID" == "x" ]; then
    if [ "x$USER_FILTER" == "xall" ]; then
        echo "$bjobs_content" | awk '$7 ~ /'"${JOB_NAME}"'/'
    else
        echo "$bjobs_content" | awk '$7 ~ /'"${JOB_NAME}"'/ && $2 == "'"${USER_FILTER}"'"'
    fi
else
    echo "$bjobs_content" | awk '$1 == "'"${JOB_ID}"'" && $2 == "'"${USER_FILTER}"'"'
fi