Erdnaxela3/bioptim_gui

name: Bioptim GUI FastAPI Tests

on:
  pull_request:
  push:
    branches:
      - main
      - ci-test-branch

jobs:
  test:
    runs-on: ubuntu-latest

    container:
      image: continuumio/miniconda3:23.10.0-1

    steps:
    - name: Checkout code
      uses: actions/checkout@v4

    - name: Install system dependencies
      run: |
        apt-get update && apt-get install -y git libtiff5

    - name: Install Conda dependencies
      run: |
        conda install -c conda-forge conda-libmamba-solver
        conda install biorbd bioviz python-graphviz -c conda-forge --solver=libmamba -y

    - name: Clone bioptim repository, checkout specific commit and install bioptim
      run: |
        git clone https://github.com/pyomeca/bioptim.git
        cd bioptim
        git checkout a3ede0e7921df909fcdf1fb92d536628594dba04
        python setup.py install

    - name: Install bioptim_gui_api requirements
      run: |
        pip install -r api/requirements.txt

    - name: Run pytest
      run: |
        pip install pytest-cov
        cd api/tests
        pytest --cov=../ --cov-report xml:../coverage.xml .
    
    - name: Upload coverage reports to Codecov
      uses: codecov/codecov-action@v3
      env:
        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}