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| .coveragerc | |
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| .github/workflows/biosim-release.yml | |
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| .github/workflows/pylint_on_pull_request.yml | |
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| .github/workflows/pypi-publish.yml | |
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| .github/workflows/run-full-tests.yml | |
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| .github/workflows/run-integration-tests.yml | |
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| .github/workflows/run-system-tests.yml | |
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| .github/workflows/run-unit-tests.yml | |
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| .github/workflows/update-docs.yaml | |
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| .gitignore | |
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| .graphics/UNCASEAL_blue.png | |
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| .graphics/US-NIH-NIGMS-Logo.png | |
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| .graphics/caltech-round.png | |
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| .graphics/dimerization-example-matplotlib.png | |
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| .graphics/dimerization-example-plot.png | |
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| .graphics/gillespy2-UML-class-diagram.png | |
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| .graphics/gillespy2-logo.png | |
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| .graphics/stochss-logo.png | |
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| .graphics/ucsb-seal-navy.jpg | |
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| .graphics/uppsala-universitet-logo-svg-vector.png | |
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| .nojekyll | |
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| .pylintrc | |
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| AUTHORS | |
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| CODE_OF_CONDUCT.md | |
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| CONTRIBUTING.md | |
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| COPYRIGHT | |
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| LICENSE | |
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| MANIFEST.in | |
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| README.md | |
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| UML_CLASS_DIAGRAM.md | |
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| gillespy2-UML-class-model.pyns | |
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| gillespy2/__init__.py | 10 | A 0 mins | A 90% |
| gillespy2/__version__.py | 9 | A 0 mins | A 100% |
| gillespy2/core/__init__.py | 26 | A 0 mins | A 100% |
| gillespy2/core/assignmentrule.py | 42 | A 0 mins | F 53% |
| gillespy2/core/cleanup.py | 11 | A 0 mins |
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| gillespy2/core/events.py | 206 | A 3 hrs | D 68% |
| gillespy2/core/functiondefinition.py | 50 | A 0 mins | D 60% |
| gillespy2/core/gillespyError.py | 42 | A 0 mins | A 100% |
| gillespy2/core/gillespySolver.py | 119 | A 35 mins | C 71% |
| gillespy2/core/jsonify.py | 278 | A 3 hrs |
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| gillespy2/core/liveGraphing.py | 203 | C 7 hrs | F 13% |
| gillespy2/core/model.py | 1,367 | F 4 days | D 66% |
