HajimeKawahara/exojax

Basics
==============

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   :maxdepth: 1

   tutorials/get_started.rst
   tutorials/optimize_spectrum.rst
   tutorials/reverse_premodit.rst
   

Applications
====================

Tips for Real Analysis
-------------------------

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   :maxdepth: 1

   tutorials/Fitting_Telluric_Lines.rst
   tutorials/reverse_precompute_grid.rst
   userguide/memorysetting.rst    
   tutorials/elower_setting.rst


Transmission Spectra
----------------------------

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   :maxdepth: 1

   tutorials/Transmission_beta.rst

|:ringed_planet:| An example of HMC-NUTS for actual hot Saturn (JWST/ERS, NIRSPEC/G395H) can be found `here <https://github.com/sh-tada/exojaxample_WASP39b>`_ .


Reflection Spectrum
------------------------------------

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   :maxdepth: 1

   tutorials/jupiters/Jupiter_cloud_model_using_amp.rst
   tutorials/jupiters/Jupiter_Hires_Modeling.rst

|:ringed_planet:| An example of HMC-NUTS for actual Jupiter reflection spectrum can be found `here <https://github.com/HajimeKawahara/exojaxample_jupiter>`_ .

Molecular/Atomic/Continuum Databases
---------------------------------------

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   :maxdepth: 1

   tutorials/select_quantum_states.rst
   tutorials/branch.rst
   tutorials/Fortrat.rst
   tutorials/CIA_opacity.rst
   tutorials/Forward_modeling_for_Fe_I_lines_of_Kurucz.rst


Multi Molecule/Segments Mdb and Opa Handler
=============================================

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   :maxdepth: 1

   tutorials/multimol.rst


Manual Settings of Opacity (not using opa)
==============================================================

You do not need `opa` nor `art` to compute opacity and spectra, if you want. 

Cross Section using Various Opacity Calculators
--------------------------------------------------------

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   :maxdepth: 1

   tutorials/opacity.rst
   tutorials/Cross_Section_using_Precomputation_Modified_Discrete_Integral_Transform.rst
   tutorials/Comparing_HITEMP_and_ExoMol.rst
   

Others
================

Scattering
--------------------

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   :maxdepth: 1

   userguide/rayleigh.rst


Micro Chemical/Physical Processes
--------------------------------------

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   tutorials/Ackerman_and_Marley_cloud_model.rst
   tutorials/Terminal_Velocity_of_Cloud_Particles.rst   
   
Macro Physical Processes
--------------------------------------

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   :maxdepth: 1

   tutorials/Rigid_Rotation.rst


Others
------------------

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   :maxdepth: 1

   tutorials/Using_FastChem2_to_calculate_the_chemical_abundances.rst
   tutorials/hjerting.rst
   tutorials/pure_absorption_rt.rst
   tutorials/voigt_function.rst
   tutorials/Cross_Section_using_Discrete_Integral_Transform.rst
   tutorials/Cross_Section_using_Modified_Discrete_Integral_Transform.rst