KarrLab/SynNetGen

digraph Overview {
    rankdir = "LR";
    node [fontname="Arial", fontsize=10, width=1, fixedsize=true];
    edge [fontname="Arial", fontsize=8];
    
    /* Model types */
    Parameters [shape=none, label="", width=0, pos="-0.5,1!"];
    DirectedGraph [label="Graph", style="filled", color="blue", fillcolor="deepskyblue", pos="0.75,1!"];
    BoolNet [label="BoolNet", style="filled", color="blue", fillcolor="deepskyblue", pos="2.5,1!"];
    Odes [label="Odes", style="filled", color="blue", fillcolor="deepskyblue", pos="4.25,1!"];
    
    /* Convert */    
    DirectedGraph -> BoolNet [label="Convert"];
    BoolNet -> Odes [label="Convert"];
    
    BoolNetToDirectedGraph [shape="none", label="Convert", width=0, height=0.35, pos="1.625,0.85!", fontcolor="grey", labelloc="b"];
    BoolNet -> BoolNetToDirectedGraph [color="grey", dir="none"];
    BoolNetToDirectedGraph -> DirectedGraph [color="grey"];
    
    OdesToDirectedGraph [shape="none", label="Convert", width=0, height=0.35, pos="2.75,0.5!", fontcolor="grey", labelloc="b"];
    Odes -> OdesToDirectedGraph [color="grey", dir="none"];
    OdesToDirectedGraph -> DirectedGraph [color="grey"];
    
    /*BoolNet -> DirectedGraph [label="Convert", color="grey", fontcolor="grey"];*/
    /*Odes -> DirectedGraph [label="Convert", color="grey", fontcolor="grey"];*/
    
    /* Generate */
    Parameters -> DirectedGraph [label="Generate"];
    
    /* Transforms */
    Transform [shape=none, label="Transform", width=0, height=0.35, pos="0.75,0.55!", fontcolor="grey", labelloc="b"];
    {
        rank=same; 
        DirectedGraph -> Transform [color="grey", dir="none"];
        Transform -> DirectedGraph [color="grey"];
    }
    
    /* Simulate */
    BoolNetData [label="Synthetic data", style="filled", color="grey", fillcolor="gray97", fontcolor="grey", pos="2.5,-0.10!"];
    OdesData [label="Synthetic data", style="filled", color="black", fillcolor="grey", pos="6,1!"];    
    {rank=same; BoolNet -> BoolNetData [label="Simulate", color="grey", fontcolor="grey"];}
    Odes -> OdesData [label="Simulate"];
    
    /* Export/import */
    GraphFile [shape=none, label="", width=0, pos="0.75,2!"];
    BoolNetFile [shape=none, label="", width=0, pos="2.5,2!"];
    OdesFile [shape=none, label="", width=0, pos="4.25,2!"];
    
    {rank=same; DirectedGraph -> GraphFile [label="Import/\nExport", color="grey", fontcolor="grey", dir="both"];}
    {rank=same; BoolNet -> BoolNetFile [label="Import/\nExport", color="grey", fontcolor="grey", dir="both"];}
    {rank=same; Odes -> OdesFile [label="Import/\nExport", color="grey", fontcolor="grey", dir="both"];}
    
}