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Showing 46 of 120 total issues

Avoid too many return statements within this function.
Open

        return True
Severity: Major
Found in bcforms/core.py - About 30 mins to fix

    Avoid too many return statements within this function.
    Open

                return False
    Severity: Major
    Found in bcforms/core.py - About 30 mins to fix

      Avoid too many return statements within this function.
      Open

              return True
      Severity: Major
      Found in bcforms/core.py - About 30 mins to fix

        Function mol_wt has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
        Open

            def mol_wt(self, value):
        """ Set the molecular weight of the subunit

        Args:
            value (:obj:`float` or :obj:`int` or :obj:`None`): molecular weight of the subunit
        Severity: Minor
        Found in bcforms/core.py - About 25 mins to fix

        Cognitive Complexity

        Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

        A method's cognitive complexity is based on a few simple rules:

        • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
        • Code is considered more complex for each "break in the linear flow of the code"
        • Code is considered more complex when "flow breaking structures are nested"

        Further reading

        Function __str__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
        Open

            def __str__(self):
        """Generate a string representation

        Returns:
            :obj:`str`: string representation
        Severity: Minor
        Found in bcforms/core.py - About 25 mins to fix

        Cognitive Complexity

        Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

        A method's cognitive complexity is based on a few simple rules:

        • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
        • Code is considered more complex for each "break in the linear flow of the code"
        • Code is considered more complex when "flow breaking structures are nested"

        Further reading

        Function get_hydrogen_atom has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
        Open

        def get_hydrogen_atom(parent_atom, bonding_hydrogens, i_monomer):
    """ Get a hydrogen atom attached to a parent atom
    Args:
        parent_atom (:obj:`openbabel.OBAtom`): parent atom
        bonding_hydrogens (:obj:`list`): hydrogens that have already been gotten
        Severity: Minor
        Found in bcforms/core.py - About 25 mins to fix

        Cognitive Complexity

        Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

        A method's cognitive complexity is based on a few simple rules:

        • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
        • Code is considered more complex for each "break in the linear flow of the code"
        • Code is considered more complex when "flow breaking structures are nested"

        Further reading

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