KarrLab/datanator_query_python

View on GitHub
datanator_query_python/util/base26.py

Summary

Maintainability
D
2 days
Test Coverage
A
100%
''' 
    Fork from git@github.com:mnowotka/chembl_ikey.git
'''

from itertools import product
from string import ascii_uppercase

t26 = [t for t in map(''.join, product(ascii_uppercase, repeat=3)) if t[0] != 'E' and (t < 'TAA' or t > 'TTV')]
d26 = list(map(''.join, product(ascii_uppercase, repeat=2)))


def base26_triplet_1(a):
    b0 = a[0]
    b1 = a[1] & 0x3f
    h = b0 | b1 << 8
    return t26[h]


def base26_triplet_2(a):
    b0 = a[1] & 0xc0
    b1 = a[2]
    b2 = a[3] & 0x0f
    h = (b0 | b1 << 8 | b2 << 16) >> 6
    return t26[h]


def base26_triplet_3(a):
    b0 = a[3] & 0xf0
    b1 = a[4]
    b2 = a[5] & 0x03
    h = (b0 | b1 << 8 | b2 << 16) >> 4
    return t26[h]


def base26_triplet_4(a):
    b0 = a[5] & 0xfc
    b1 = a[6]
    h = (b0 | b1 << 8) >> 2
    return t26[h]


def base26_dublet_for_bits_28_to_36(a):
    b0 = a[3] & 0xf0
    b1 = a[4] & 0x1f
    h = (b0 | b1 << 8) >> 4
    return d26[h]


def base26_dublet_for_bits_56_to_64(a):
    b0 = a[7]
    b1 = a[8] & 0x01
    h = b0 | b1 << 8
    return d26[h]