KarrLab/datanator_rest_api

"""  Reactions Controller

:Author: Zhouyang Lian < zhouyang.lian@familian.life >
:Date: 2019-10-28
:Copyright: 2019, Karr Lab
:License: MIT
"""


from datanator_query_python.config.query_manager import TaxonManager

t_manager = TaxonManager().txn_manager()


class canon_rank_distance:

    def get(ncbi_id):
        results = t_manager.get_canon_rank_distance(ncbi_id, front_end=True)
        return results


class canon_rank_distance_by_name:

    def get(name):
        results = t_manager.get_canon_rank_distance_by_name(name, front_end=True)
        if results == [{name: 0}]:
            return {"code": 404, "message": "Taxon not found."}, 404
        return results


class is_child:
    
    def get(src_tax_ids, target_tax_id):
        return t_manager.each_under_category(src_tax_ids, target_tax_id)


class canon_rank_common_distance:

    def get(org_0, org_1):
        return t_manager.get_canon_common_ancestor(org_0, org_1)


class summary:
    

    class taxon_distribution:
        def get():
            return {"others": 86333, 
                    "Homo sapiens": 51775, 
                    "Mus musculus": 41123, 
                    "Arabidopsis thaliana": 14247, 
                    "Rattus norvegicus": 12124, 
                    "Escherichia coli str. K-12 substr. MG1655": 11788, 
                    "Saccharomyces cerevisiae S288C": 11359, 
                    "Lactococcus lactis subsp. lactis Il1403": 10983, 
                    "Methanosarcina acetivorans C2A": 10979, 
                    "Escherichia coli K-12": 8317, 
                    "Escherichia coli": 7875, 
                    "Bos taurus": 5814}