KarrLab/obj_tables

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examples/biochemical_network/data.yml

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Compound:
- __id: 0
  __type: Compound
  id: D_Fructose_6_phosphate
  identifiers: kegg.compound:C00085
  model:
    __id: 5
    __type: Model
    id: e_coli
  name: D-Fructose 6-phosphate
- __id: 1
  __type: Compound
  id: D_Glucose
  identifiers: kegg.compound:C00031
  model:
    __id: 5
    __type: Model
    id: e_coli
  name: D-Glucose
- __id: 2
  __type: Compound
  id: D_Glucose_6_phosphate
  identifiers: kegg.compound:C00092
  model:
    __id: 5
    __type: Model
    id: e_coli
  name: D-Glucose 6-phosphate
- __id: 3
  __type: Compound
  id: Phosphoenolpyruvate
  identifiers: kegg.compound:C00074
  model:
    __id: 5
    __type: Model
    id: e_coli
  name: Phosphoenolpyruvate
- __id: 4
  __type: Compound
  id: Pyruvate
  identifiers: kegg.compound:C00022
  model:
    __id: 5
    __type: Model
    id: e_coli
  name: Pyruvate
Model:
- __id: 5
  __type: Model
  compounds:
  - __id: 0
    __type: Compound
    id: D_Fructose_6_phosphate
  - __id: 1
    __type: Compound
    id: D_Glucose
  - __id: 2
    __type: Compound
    id: D_Glucose_6_phosphate
  - __id: 3
    __type: Compound
    id: Phosphoenolpyruvate
  - __id: 4
    __type: Compound
    id: Pyruvate
  id: e_coli
  name: ''
  reactions:
  - __id: 6
    __type: Reaction
    id: PGI_R02740
  - __id: 7
    __type: Reaction
    id: PTS_RPTSsy
Reaction:
- __id: 6
  __type: Reaction
  equation: -1.0 D_Glucose_6_phosphate; 1.0 D_Fructose_6_phosphate
  gene: PGI
  id: PGI_R02740
  identifiers: kegg.reaction:R02740
  is_reversible: true
  model:
    __id: 5
    __type: Model
    id: e_coli
  name: ''
- __id: 7
  __type: Reaction
  equation: -1.0 D_Glucose; -1.0 Phosphoenolpyruvate; 1.0 Pyruvate; 1.0 D_Glucose_6_phosphate
  gene: PTS
  id: PTS_RPTSsy
  identifiers: kegg.reaction:RPTSsy
  is_reversible: true
  model:
    __id: 5
    __type: Model
    id: e_coli
  name: ''
_classMetadata:
  Compound:
    class: Compound
    description: Compound
    name: Compound
  Model:
    class: Model
    description: Model
    name: Model
  Reaction:
    class: Reaction
    description: Reaction
    name: Reaction
_documentMetadata:
  date: '2020-07-07 21:29:38'
  objTablesVersion: 1.0.9