KarrLab/obj_tables

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examples/kinetic_metabolic_model/data.tsv/Metabolites.tsv

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!!ObjTables type='Data' tableFormat='row' class='Metabolite' name='Metabolites' date='2020-06-03 15:21:24' objTablesVersion='1.0.14'        
!Id    !Name    !Formula
1pyr5c    1-Pyrroline-5-carboxylate    C5H6NO2
2ahbut    (S)-2-Aceto-2-hydroxybutanoate    C6H9O4
2aobut    L-2-Amino-3-oxobutanoate    C4H7NO3
2cpr5p    1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate    C12H13NO9P
2dda7p    2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate    C7H10O10P
2ddg6p    2-Dehydro-3-deoxy-D-gluconate 6-phosphate    C6H8O9P
2ippm    2-Isopropylmaleate    C7H8O4
2obut    2-Oxobutanoate    C4H5O3
2pg    D-Glycerate 2-phosphate    C3H4O7P
3c2hmp    3-Carboxy-2-hydroxy-4-methylpentanoate    C7H10O5
3c3hmp    3-Carboxy-3-hydroxy-4-methylpentanoate    C7H10O5
3c4mop    3-Carboxy-4-methyl-2-oxopentanoate    C7H8O5
3dhq    3-Dehydroquinate    C7H9O6
3dhsk    3-Dehydroshikimate    C7H7O5
3haACP    (3R)-3-Hydroxyacyl-[acyl-carrier protein]    C15H27N2O9PRS
3hbcoa    (S)-3-Hydroxybutanoyl-CoA    C25H38N7O18P3S
3hcddec5eACP    (R)-3-hydroxy-cis-dodec-5-enoyl-[acyl-carrier protein]    C23H41N2O9PRS
3hcmrs7eACP    (R)-3-hydroxy-cis-myristol-7-eoyl-[acyl-carrier protein]    C25H45N2O9PRS
3hcpalm9eACP    (R)-3-hydroxy-cis-palm-9-eoyl-[acyl-carrier protein]    C27H49N2O9PRS
3hdcoa    (S)-3-Hydroxydecanoyl-CoA    C31H50N7O18P3S
3hddcoa    (S)-3-Hydroxydodecanoyl-CoA    C33H54N7O18P3S
3hddecACP    (R)-3-Hydroxydodecanoyl-[acyl-carrier protein]    C23H43N2O9PRS
3hdecACP    (R)-3-Hydroxydecanoyl-[acyl-carrier protein]    C21H39N2O9PRS
3hhcoa    (S)-3-Hydroxyhexanoyl-CoA    C27H42N7O18P3S
3hhdcoa    (S)-3-Hydroxyhexadecanoyl-CoA    C37H62N7O18P3S
3hhexACP    (R)-3-Hydroxyhexanoyl-[acyl-carrier protein]    C17H31N2O9PRS
3hmrsACP    (R)-3-Hydroxytetradecanoyl-[acyl-carrier protein]    C25H47N2O9PRS
3hocoa    (S)-3-Hydroxyoctanoyl-CoA    C29H46N7O18P3S
3hoctaACP    (R)-3-Hydroxyoctadecanoyl-[acyl-carrier protein]    C29H55N2O9PRS
3hoctACP    (R)-3-Hydroxyoctanoyl-[acyl-carrier protein]    C19H35N2O9PRS
3hodcoa    (S)-3-Hydroxyoctadecanoyl-CoA    C39H66N7O18P3S
3hpalmACP    R-3-hydroxypalmitoyl-[acyl-carrier protein]    C27H51N2O9PRS
3htdcoa    (S)-3-Hydroxytetradecanoyl-CoA    C35H58N7O18P3S
3ig3p    C'-(3-Indolyl)-glycerol 3-phosphate    C11H12NO6P
3mob    3-Methyl-2-oxobutanoate    C5H7O3
3mop    (S)-3-Methyl-2-oxopentanoate    C6H9O3
3ocddec5eACP    3-oxo-cis-dodec-5-enoyl-[acyl-carrier protein]    C23H39N2O9PRS
3ocmrs7eACP    3-oxo-cis-myristol-7-eoyl-[acyl-carrier protein]    C25H43N2O9PRS
3ocpalm9eACP    3-oxo-cis-palm-9-eoyl-[acyl-carrier protein]    C27H47N2O9PRS
3odcoa    3-Oxodecanoyl-CoA    C31H48N7O18P3S
3oddcoa    3-Oxododecanoyl-CoA    C33H52N7O18P3S
3oddecACP    3-Oxododecanoyl-[acyl-carrier protein]    C23H41N2O9PRS
3odecACP    3-Oxodecanoyl-[acyl-carrier protein]    C21H37N2O9PRS
3ohcoa    3-Oxohexanoyl-CoA    C27H40N7O18P3S
3ohdcoa    3-Oxohexadecanoyl-CoA    C37H60N7O18P3S
3ohexACP    3-Oxohexanoyl-[acyl-carrier protein]    C17H29N2O9PRS
3omrsACP    3-Oxotetradecanoyl-[acyl-carrier protein]    C25H45N2O9PRS
3oocoa    3-Oxooctanoyl-CoA    C29H44N7O18P3S
3ooctACP    3-Oxooctanoyl-[acyl-carrier protein]    C19H33N2O9PRS
3ooctdACP    3-Oxooctadecanoyl-[acyl-carrier protein]    C29H53N2O9PRS
3oodcoa    3-Oxooctadecanoyl-CoA    C39H64N7O18P3S
3opalmACP    3-Oxohexadecanoyl-[acyl-carrier protein]    C27H49N2O9PRS
3otdcoa    3-Oxotetradecanoyl-CoA    C35H56N7O18P3S
3pg    3-Phospho-D-glycerate    C3H4O7P
3php    3-Phosphohydroxypyruvate    C3H2O7P
3psme    5-O-(1-Carboxyvinyl)-3-phosphoshikimate    C10H9O10P
4abut    4-Aminobutanoate    C4H9NO2
4abutn    4-Aminobutanal    C4H10NO
4mop    4-Methyl-2-oxopentanoate    C6H9O3
4pasp    4-Phospho-L-aspartate    C4H6NO7P
5aizc    5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate    C9H11N3O9P
5caiz    5-phosphoribosyl-5-carboxyaminoimidazole    C9H11N3O9P
5mthf    5-Methyltetrahydrofolate    C20H24N7O6
6pgc    6-Phospho-D-gluconate    C6H10O10P
6pgl    6-phospho-D-glucono-1,5-lactone    C6H9O9P
10fthf    10-Formyltetrahydrofolate    C20H21N7O7
12ppd-R    (R)-Propane-1,2-diol    C3H8O2
13dpg    3-Phospho-D-glyceroyl phosphate    C3H4O10P2
15dap    1,5-Diaminopentane    C5H16N2
23dhdp    2,3-Dihydrodipicolinate    C7H5NO4
23dhmb    (R)-2,3-Dihydroxy-3-methylbutanoate    C5H9O4
23dhmp    (R)-2,3-Dihydroxy-3-methylpentanoate    C6H11O4
25aics    (S)-2-[5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate    C13H15N4O12P
26dap-LL    LL-2,6-Diaminoheptanedioate     C7H14N2O4
26dap-M    meso-2,6-Diaminoheptanedioate    C7H14N2O4
34hpp    3-(4-Hydroxyphenyl)pyruvate    C9H7O4
aacoa    Acetoacetyl-CoA    C25H36N7O18P3S
aact    Aminoacetone    C3H8NO
ac    Acetate    C2H3O2
acACP    Acetyl-ACP    C13H23N2O8PRS
acald    Acetaldehyde    C2H4O
accoa    Acetyl-CoA    C23H34N7O17P3S
acetol    Acetol    C3H6O2
acg5p    N-Acetyl-L-glutamyl 5-phosphate    C7H9NO8P
acg5sa    N-Acetyl-L-glutamate 5-semialdehyde    C7H10NO4
acglu    N-Acetyl-L-glutamate    C7H9NO5
acon-C    cis-Aconitate    C6H3O6
acorn    N2-Acetyl-L-ornithine    C7H14N2O3
ACP    acyl carrier protein    C11H21N2O7PRS
acser    O-Acetyl-L-serine    C5H9NO4
actACP    Acetoacetyl-ACP    C15H25N2O9PRS
actp    Acetyl phosphate    C2H3O5P
adp    Adenosine diphosphate    C10H12N5O10P2
adpglc    ADPglucose    C16H23N5O15P2
agm    Agmatine    C5H16N4
aicar    5-Amino-1-(5-Phospho-D-ribosyl)imidazole-4-carboxamide    C9H13N4O8P
air    5-amino-1-(5-phospho-D-ribosyl)imidazole    C8H12N3O7P
akg    2-Oxoglutarate    C5H4O5
ala-D    D-Alanine    C3H7NO2
ala-L    L-Alanine    C3H7NO2
alac-S    (S)-2-Acetolactate    C5H7O4
amp    Adenosine monophosphate    C10H12N5O7P
anth    Anthranilate    C7H6NO2
arg-L    L-Arginine    C6H15N4O2
argsuc    N(omega)-(L-Arginino)succinate    C10H17N4O6
asn-L    L-Asparagine    C4H8N2O3
asp-L    L-Aspartate    C4H6NO4
aspsa    L-Aspartate 4-semialdehyde    C4H7NO3
atp    Adenosine triphosphate    C10H12N5O13P3
b2coa    Crotonoyl-CoA    C25H36N7O17P3S
Biomass    Biomass    
btcoa    Butanoyl-CoA    C25H38N7O17P3S
but    Butyrate (n-C4:0)    C4H7O2
but2eACP    But-2-enoyl-[acyl-carrier protein]    C15H25N2O8PRS
butACP    Butyryl-ACP (n-C4:0ACP)    C15H27N2O8PRS
cbp    Carbamoyl phosphate    CH2NO5P
cddec5eACP    cis-dodec-5-enoyl-[acyl-carrier protein] (n-C12:1)    C23H41N2O8PRS
cdec3eACP    cis-dec-3-enoyl-[acyl-carrier protein] (n-C10:1)    C21H37N2O8PRS
chor    chorismate    C10H8O6
cit    Citrate    C6H5O7
citr-L    L-Citrulline    C6H13N3O3
co2    CO2    CO2
coa    Coenzyme A    C21H32N7O16P3S
cys-L    L-Cysteine    C3H7NO2S
cyst-L    L-Cystathionine    C7H14N2O4S
dc2coa    trans-Dec-2-enoyl-CoA    C31H48N7O17P3S
dca    Decanoate (n-C10:0)    C10H19O2
dcaACP    Decanoyl-ACP (n-C10:0ACP)    C21H39N2O8PRS
dcacoa    Decanoyl-CoA (n-C10:0CoA)    C31H50N7O17P3S
dcamp    N6-(1,2-Dicarboxyethyl)-AMP    C14H14N5O11P
dd2coa    trans-Dodec-2-enoyl-CoA    C33H52N7O17P3S
ddca    Dodecanoate (n-C12:0)    C12H23O2
ddcaACP    Dodecanoyl-ACP (n-C12:0ACP)    C23H43N2O8PRS
ddcacoa    Dodecanoyl-CoA (n-C12:0CoA)    C33H54N7O17P3S
dhap    Dihydroxyacetone phosphate    C3H5O6P
e4p    D-Erythrose 4-phosphate    C4H7O7P
eig3p    D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate    C6H9N2O6P
etoh    Ethanol    C2H6O
f6p    D-Fructose 6-phosphate    C6H11O9P
fad    Flavin adenine dinucleotide oxidized    C27H31N9O15P2
fadh2    Flavin adenine dinucleotide reduced    C27H33N9O15P2
fdp    D-Fructose 1,6-bisphosphate    C6H10O12P2
fgam    N2-Formyl-N1-(5-phospho-D-ribosyl)glycinamide    C8H13N2O9P
for    Formate    CHO2
fprica    5-Formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide    C10H13N4O9P
fum    Fumarate    C4H2O4
g1p    D-Glucose 1-phosphate    C6H11O9P
g3p    Glyceraldehyde 3-phosphate    C3H5O6P
g6p    D-Glucose 6-phosphate    C6H11O9P
gar    N1-(5-Phospho-D-ribosyl)glycinamide    C7H14N2O8P
gdp    GDP    C10H12N5O11P2
gg4abut    gamma-glutamyl-gamma aminobutyric acid    C9H15N2O5
ggbutal    gamma-glutamyl-gamma-butyraldehyde    C9H16N2O4
ggptrc    gamma-glutamyl-putrescine    C9H20N3O3
glc-D    D-Glucose    C6H12O6
gln-L    L-Glutamine    C5H10N2O3
glu5p    L-Glutamate 5-phosphate    C5H8NO7P
glu5sa    L-Glutamate 5-semialdehyde    C5H9NO3
glu-L    L-Glutamate    C5H8NO4
glx    Glyoxylate    C2HO3
gly    Glycine    C2H5NO2
glyc    Glycerol    C3H8O3
glyc3p    Glycerol 3-phosphate    C3H7O6P
glycogen    glycogen    C6H10O5
gthrd    Reduced glutathione    C10H16N3O6S
gtp    GTP    C10H12N5O14P3
h    H+    H
h2o    H2O    H2O
h2o2    Hydrogen peroxide    H2O2
h2s    Hydrogen sulfide    H2S
hco3    Bicarbonate    CHO3
hcys-L    L-Homocysteine    C4H9NO2S
hdca    Hexadecanoate (n-C16:0)    C16H31O2
hdcea    Hexadecenoate (n-C16:1)    C16H29O2
hdcoa    Hexadecenoyl-CoA (n-C16:1CoA)    C37H60N7O17P3S
hdd2coa    trans-Hexadec-2-enoyl-CoA    C37H60N7O17P3S
hdeACP    cis-hexadec-9-enoyl-[acyl-carrier protein] (n-C16:1)    C27H49N2O8PRS
hexACP    Hexanoyl-ACP (n-C6:0ACP)    C17H31N2O8PRS
his-L    L-Histidine    C6H9N3O2
hisp    L-Histidinol phosphate    C6H11N3O4P
histd    L-Histidinol    C6H12N3O
hom-L    L-Homoserine    C4H9NO3
hx2coa    trans-Hex-2-enoyl-CoA    C27H40N7O17P3S
hxa    Hexanoate (n-C6:0)    C6H11O2
hxcoa    Hexanoyl-CoA (n-C6:0CoA)    C27H42N7O17P3S
icit    Isocitrate    C6H5O7
ile-L    L-Isoleucine    C6H13NO2
imacp    3-(Imidazol-4-yl)-2-oxopropyl phosphate    C6H7N2O5P
imp    IMP    C10H11N4O8P
lac-D    D-Lactate    C3H5O3
leu-L    L-Leucine    C6H13NO2
lgt-S    (R)-S-Lactoylglutathione    C13H20N3O8S
lys-L    L-Lysine    C6H15N2O2
mal-L    L-Malate    C4H4O5
malACP    Malonyl-[acyl-carrier protein]    C14H22N2O10PRS
malcoa    Malonyl-CoA    C24H33N7O19P3S
met-L    L-Methionine    C5H11NO2S
mlthf    5,10-Methylenetetrahydrofolate    C20H21N7O6
mthgxl    Methylglyoxal    C3H4O2
myrsACP    Myristoyl-ACP (n-C14:0ACP)    C25H47N2O8PRS
nad    Nicotinamide adenine dinucleotide    C21H26N7O14P2
nadh    Nicotinamide adenine dinucleotide - reduced    C21H27N7O14P2
nadp    Nicotinamide adenine dinucleotide phosphate    C21H25N7O17P3
nadph    Nicotinamide adenine dinucleotide phosphate - reduced    C21H26N7O17P3
nh4    Ammonium    H4N
o2    O2    O2
oaa    Oxaloacetate    C4H2O5
oc2coa    trans-Oct-2-enoyl-CoA    C29H44N7O17P3S
ocACP    Octanoyl-ACP (n-C8:0ACP)    C19H35N2O8PRS
occoa    Octanoyl-CoA (n-C8:0CoA)    C29H46N7O17P3S
ocdca    octadecanoate (n-C18:0)    C18H35O2
ocdcaACP    Octadecanoyl-ACP (n-C18:0ACP)    C29H55N2O8PRS
ocdcea    octadecenoate (n-C18:1)    C18H33O2
octa    octanoate (n-C8:0)    C8H15O2
octeACP    cis-octadec-11-enoyl-[acyl-carrier protein] (n-C18:1)    C29H53N2O8PRS
od2coa    trans-Octadec-2-enoyl-CoA    C39H64N7O17P3S
odecoa    Octadecenoyl-CoA (n-C18:1CoA)    C39H64N7O17P3S
orn    Ornithine    C5H13N2O2
palmACP    Palmitoyl-ACP (n-C16:0ACP)    C27H51N2O8PRS
pep    Phosphoenolpyruvate    C3H2O6P
phe-L    L-Phenylalanine    C9H11NO2
phom    O-Phospho-L-homoserine    C4H8NO6P
phpyr    Phenylpyruvate    C9H7O3
pi    Phosphate    HO4P
pmtcoa    Palmitoyl-CoA (n-C16:0CoA)    C37H62N7O17P3S
pphn    Prephenate    C10H8O6
ppi    Diphosphate    HO7P2
pram    5-Phospho-beta-D-ribosylamine    C5H11NO7P
pran    N-(5-Phospho-D-ribosyl)anthranilate    C12H13NO9P
prbamp    1-(5-Phosphoribosyl)-AMP    C15H19N5O14P2
prbatp    1-(5-Phosphoribosyl)-ATP    C15H19N5O20P4
prfp    1-(5-Phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide    C15H21N5O15P2
prlp    5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4-carboxamide    C15H21N5O15P2
pro-L    L-Proline    C5H9NO2
prpp    5-Phospho-alpha-D-ribose 1-diphosphate    C5H8O14P3
pser-L    O-Phospho-L-serine    C3H6NO6P
ptrc    Putrescine    C4H14N2
pyr    Pyruvate    C3H3O3
q8    Ubiquinone-8    C49H74O4
q8h2    Ubiquinol-8    C49H76O4
r5p    alpha-D-Ribose 5-phosphate    C5H9O8P
rib-D    D-Ribose    C5H10O5
ru5p-D    D-Ribulose 5-phosphate    C5H9O8P
s7p    Sedoheptulose 7-phosphate    C7H13O10P
ser-D    D-Serine    C3H7NO3
ser-L    L-Serine    C3H7NO3
skm    Shikimate    C7H9O5
skm5p    Shikimate 5-phosphate    C7H8O8P
sl2a6o    N-Succinyl-2-L-amino-6-oxoheptanedioate    C11H12NO8
sl26da    N-Succinyl-LL-2,6-diaminoheptanedioate    C11H16N2O7
stcoa    Stearoyl-CoA (n-C18:0CoA)    C39H66N7O17P3S
sucarg    N2-Succinyl-L-arginine    C10H17N4O5
succ    Succinate    C4H4O4
succoa    Succinyl-CoA    C25H35N7O19P3S
sucglu    N2-Succinyl-L-glutamate    C9H10NO7
suchms    O-Succinyl-L-homoserine    C8H12NO6
sucorn    N2-Succinyl-L-ornithine    C9H15N2O5
sucsal    Succinic semialdehyde    C4H5O3
t3c5ddeceACP    trans-3-cis-5-dodecenoyl-[acyl-carrier protein]    C23H39N2O8PRS
t3c7mrseACP    trans-3-cis-7-myristoleoyl-[acyl-carrier protein]    C25H43N2O8PRS
t3c9palmeACP    trans-3-cis-9-palmitoleoyl-[acyl-carrier protein]    C27H47N2O8PRS
t3c11vaceACP    trans-3-cis-11-vacceoyl-[acyl-carrier protein]    C29H51N2O8PRS
td2coa    trans-Tetradec-2-enoyl-CoA    C35H56N7O17P3S
tdcoa    Tetradecanoyl-CoA (n-C14:0CoA)    C35H58N7O17P3S
tddec2eACP    trans-Dodec-2-enoyl-[acyl-carrier protein]    C23H41N2O8PRS
tdeACP    cis-tetradec-7-enoyl-[acyl-carrier protein] (n-C14:1)    C25H45N2O8PRS
tdec2eACP    trans-Dec-2-enoyl-[acyl-carrier protein]    C21H37N2O8PRS
tdecoa    Tetradecenoyl-CoA (n-C14:1CoA)    C35H56N7O17P3S
thdp    2,3,4,5-Tetrahydrodipicolinate    C7H7NO4
thex2eACP    trans-Hex-2-enoyl-[acyl-carrier protein]    C17H29N2O8PRS
thf    5,6,7,8-Tetrahydrofolate    C19H21N7O6
thr-L    L-Threonine    C4H9NO3
tmrs2eACP    trans-Tetradec-2-enoyl-[acyl-carrier protein]    C25H45N2O8PRS
toct2eACP    trans-Oct-2-enoyl-[acyl-carrier protein]    C19H33N2O8PRS
toctd2eACP    trans-octadec-2-enoyl-[acyl-carrier protein]    C29H53N2O8PRS
tpalm2eACP    trans-Hexadec-2-enoyl-[acyl-carrier protein]    C27H49N2O8PRS
trp-L    L-Tryptophan    C11H12N2O2
ttdca    tetradecanoate (n-C14:0)    C14H27O2
ttdcea    tetradecenoate (n-C14:1)    C14H25O2
tyr-L    L-Tyrosine    C9H11NO3
urea    Urea    CH4N2O
val-L    L-Valine    C5H11NO2
xu5p-D    D-Xylulose 5-phosphate    C5H9O8P