examples/kinetic_metabolic_model/data.tsv/Metabolites.tsv
!!ObjTables type='Data' tableFormat='row' class='Metabolite' name='Metabolites' date='2020-06-03 15:21:24' objTablesVersion='1.0.14'
!Id !Name !Formula
1pyr5c 1-Pyrroline-5-carboxylate C5H6NO2
2ahbut (S)-2-Aceto-2-hydroxybutanoate C6H9O4
2aobut L-2-Amino-3-oxobutanoate C4H7NO3
2cpr5p 1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate C12H13NO9P
2dda7p 2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate C7H10O10P
2ddg6p 2-Dehydro-3-deoxy-D-gluconate 6-phosphate C6H8O9P
2ippm 2-Isopropylmaleate C7H8O4
2obut 2-Oxobutanoate C4H5O3
2pg D-Glycerate 2-phosphate C3H4O7P
3c2hmp 3-Carboxy-2-hydroxy-4-methylpentanoate C7H10O5
3c3hmp 3-Carboxy-3-hydroxy-4-methylpentanoate C7H10O5
3c4mop 3-Carboxy-4-methyl-2-oxopentanoate C7H8O5
3dhq 3-Dehydroquinate C7H9O6
3dhsk 3-Dehydroshikimate C7H7O5
3haACP (3R)-3-Hydroxyacyl-[acyl-carrier protein] C15H27N2O9PRS
3hbcoa (S)-3-Hydroxybutanoyl-CoA C25H38N7O18P3S
3hcddec5eACP (R)-3-hydroxy-cis-dodec-5-enoyl-[acyl-carrier protein] C23H41N2O9PRS
3hcmrs7eACP (R)-3-hydroxy-cis-myristol-7-eoyl-[acyl-carrier protein] C25H45N2O9PRS
3hcpalm9eACP (R)-3-hydroxy-cis-palm-9-eoyl-[acyl-carrier protein] C27H49N2O9PRS
3hdcoa (S)-3-Hydroxydecanoyl-CoA C31H50N7O18P3S
3hddcoa (S)-3-Hydroxydodecanoyl-CoA C33H54N7O18P3S
3hddecACP (R)-3-Hydroxydodecanoyl-[acyl-carrier protein] C23H43N2O9PRS
3hdecACP (R)-3-Hydroxydecanoyl-[acyl-carrier protein] C21H39N2O9PRS
3hhcoa (S)-3-Hydroxyhexanoyl-CoA C27H42N7O18P3S
3hhdcoa (S)-3-Hydroxyhexadecanoyl-CoA C37H62N7O18P3S
3hhexACP (R)-3-Hydroxyhexanoyl-[acyl-carrier protein] C17H31N2O9PRS
3hmrsACP (R)-3-Hydroxytetradecanoyl-[acyl-carrier protein] C25H47N2O9PRS
3hocoa (S)-3-Hydroxyoctanoyl-CoA C29H46N7O18P3S
3hoctaACP (R)-3-Hydroxyoctadecanoyl-[acyl-carrier protein] C29H55N2O9PRS
3hoctACP (R)-3-Hydroxyoctanoyl-[acyl-carrier protein] C19H35N2O9PRS
3hodcoa (S)-3-Hydroxyoctadecanoyl-CoA C39H66N7O18P3S
3hpalmACP R-3-hydroxypalmitoyl-[acyl-carrier protein] C27H51N2O9PRS
3htdcoa (S)-3-Hydroxytetradecanoyl-CoA C35H58N7O18P3S
3ig3p C'-(3-Indolyl)-glycerol 3-phosphate C11H12NO6P
3mob 3-Methyl-2-oxobutanoate C5H7O3
3mop (S)-3-Methyl-2-oxopentanoate C6H9O3
3ocddec5eACP 3-oxo-cis-dodec-5-enoyl-[acyl-carrier protein] C23H39N2O9PRS
3ocmrs7eACP 3-oxo-cis-myristol-7-eoyl-[acyl-carrier protein] C25H43N2O9PRS
3ocpalm9eACP 3-oxo-cis-palm-9-eoyl-[acyl-carrier protein] C27H47N2O9PRS
3odcoa 3-Oxodecanoyl-CoA C31H48N7O18P3S
3oddcoa 3-Oxododecanoyl-CoA C33H52N7O18P3S
3oddecACP 3-Oxododecanoyl-[acyl-carrier protein] C23H41N2O9PRS
3odecACP 3-Oxodecanoyl-[acyl-carrier protein] C21H37N2O9PRS
3ohcoa 3-Oxohexanoyl-CoA C27H40N7O18P3S
3ohdcoa 3-Oxohexadecanoyl-CoA C37H60N7O18P3S
3ohexACP 3-Oxohexanoyl-[acyl-carrier protein] C17H29N2O9PRS
3omrsACP 3-Oxotetradecanoyl-[acyl-carrier protein] C25H45N2O9PRS
3oocoa 3-Oxooctanoyl-CoA C29H44N7O18P3S
3ooctACP 3-Oxooctanoyl-[acyl-carrier protein] C19H33N2O9PRS
3ooctdACP 3-Oxooctadecanoyl-[acyl-carrier protein] C29H53N2O9PRS
3oodcoa 3-Oxooctadecanoyl-CoA C39H64N7O18P3S
3opalmACP 3-Oxohexadecanoyl-[acyl-carrier protein] C27H49N2O9PRS
3otdcoa 3-Oxotetradecanoyl-CoA C35H56N7O18P3S
3pg 3-Phospho-D-glycerate C3H4O7P
3php 3-Phosphohydroxypyruvate C3H2O7P
3psme 5-O-(1-Carboxyvinyl)-3-phosphoshikimate C10H9O10P
4abut 4-Aminobutanoate C4H9NO2
4abutn 4-Aminobutanal C4H10NO
4mop 4-Methyl-2-oxopentanoate C6H9O3
4pasp 4-Phospho-L-aspartate C4H6NO7P
5aizc 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate C9H11N3O9P
5caiz 5-phosphoribosyl-5-carboxyaminoimidazole C9H11N3O9P
5mthf 5-Methyltetrahydrofolate C20H24N7O6
6pgc 6-Phospho-D-gluconate C6H10O10P
6pgl 6-phospho-D-glucono-1,5-lactone C6H9O9P
10fthf 10-Formyltetrahydrofolate C20H21N7O7
12ppd-R (R)-Propane-1,2-diol C3H8O2
13dpg 3-Phospho-D-glyceroyl phosphate C3H4O10P2
15dap 1,5-Diaminopentane C5H16N2
23dhdp 2,3-Dihydrodipicolinate C7H5NO4
23dhmb (R)-2,3-Dihydroxy-3-methylbutanoate C5H9O4
23dhmp (R)-2,3-Dihydroxy-3-methylpentanoate C6H11O4
25aics (S)-2-[5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate C13H15N4O12P
26dap-LL LL-2,6-Diaminoheptanedioate C7H14N2O4
26dap-M meso-2,6-Diaminoheptanedioate C7H14N2O4
34hpp 3-(4-Hydroxyphenyl)pyruvate C9H7O4
aacoa Acetoacetyl-CoA C25H36N7O18P3S
aact Aminoacetone C3H8NO
ac Acetate C2H3O2
acACP Acetyl-ACP C13H23N2O8PRS
acald Acetaldehyde C2H4O
accoa Acetyl-CoA C23H34N7O17P3S
acetol Acetol C3H6O2
acg5p N-Acetyl-L-glutamyl 5-phosphate C7H9NO8P
acg5sa N-Acetyl-L-glutamate 5-semialdehyde C7H10NO4
acglu N-Acetyl-L-glutamate C7H9NO5
acon-C cis-Aconitate C6H3O6
acorn N2-Acetyl-L-ornithine C7H14N2O3
ACP acyl carrier protein C11H21N2O7PRS
acser O-Acetyl-L-serine C5H9NO4
actACP Acetoacetyl-ACP C15H25N2O9PRS
actp Acetyl phosphate C2H3O5P
adp Adenosine diphosphate C10H12N5O10P2
adpglc ADPglucose C16H23N5O15P2
agm Agmatine C5H16N4
aicar 5-Amino-1-(5-Phospho-D-ribosyl)imidazole-4-carboxamide C9H13N4O8P
air 5-amino-1-(5-phospho-D-ribosyl)imidazole C8H12N3O7P
akg 2-Oxoglutarate C5H4O5
ala-D D-Alanine C3H7NO2
ala-L L-Alanine C3H7NO2
alac-S (S)-2-Acetolactate C5H7O4
amp Adenosine monophosphate C10H12N5O7P
anth Anthranilate C7H6NO2
arg-L L-Arginine C6H15N4O2
argsuc N(omega)-(L-Arginino)succinate C10H17N4O6
asn-L L-Asparagine C4H8N2O3
asp-L L-Aspartate C4H6NO4
aspsa L-Aspartate 4-semialdehyde C4H7NO3
atp Adenosine triphosphate C10H12N5O13P3
b2coa Crotonoyl-CoA C25H36N7O17P3S
Biomass Biomass
btcoa Butanoyl-CoA C25H38N7O17P3S
but Butyrate (n-C4:0) C4H7O2
but2eACP But-2-enoyl-[acyl-carrier protein] C15H25N2O8PRS
butACP Butyryl-ACP (n-C4:0ACP) C15H27N2O8PRS
cbp Carbamoyl phosphate CH2NO5P
cddec5eACP cis-dodec-5-enoyl-[acyl-carrier protein] (n-C12:1) C23H41N2O8PRS
cdec3eACP cis-dec-3-enoyl-[acyl-carrier protein] (n-C10:1) C21H37N2O8PRS
chor chorismate C10H8O6
cit Citrate C6H5O7
citr-L L-Citrulline C6H13N3O3
co2 CO2 CO2
coa Coenzyme A C21H32N7O16P3S
cys-L L-Cysteine C3H7NO2S
cyst-L L-Cystathionine C7H14N2O4S
dc2coa trans-Dec-2-enoyl-CoA C31H48N7O17P3S
dca Decanoate (n-C10:0) C10H19O2
dcaACP Decanoyl-ACP (n-C10:0ACP) C21H39N2O8PRS
dcacoa Decanoyl-CoA (n-C10:0CoA) C31H50N7O17P3S
dcamp N6-(1,2-Dicarboxyethyl)-AMP C14H14N5O11P
dd2coa trans-Dodec-2-enoyl-CoA C33H52N7O17P3S
ddca Dodecanoate (n-C12:0) C12H23O2
ddcaACP Dodecanoyl-ACP (n-C12:0ACP) C23H43N2O8PRS
ddcacoa Dodecanoyl-CoA (n-C12:0CoA) C33H54N7O17P3S
dhap Dihydroxyacetone phosphate C3H5O6P
e4p D-Erythrose 4-phosphate C4H7O7P
eig3p D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate C6H9N2O6P
etoh Ethanol C2H6O
f6p D-Fructose 6-phosphate C6H11O9P
fad Flavin adenine dinucleotide oxidized C27H31N9O15P2
fadh2 Flavin adenine dinucleotide reduced C27H33N9O15P2
fdp D-Fructose 1,6-bisphosphate C6H10O12P2
fgam N2-Formyl-N1-(5-phospho-D-ribosyl)glycinamide C8H13N2O9P
for Formate CHO2
fprica 5-Formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide C10H13N4O9P
fum Fumarate C4H2O4
g1p D-Glucose 1-phosphate C6H11O9P
g3p Glyceraldehyde 3-phosphate C3H5O6P
g6p D-Glucose 6-phosphate C6H11O9P
gar N1-(5-Phospho-D-ribosyl)glycinamide C7H14N2O8P
gdp GDP C10H12N5O11P2
gg4abut gamma-glutamyl-gamma aminobutyric acid C9H15N2O5
ggbutal gamma-glutamyl-gamma-butyraldehyde C9H16N2O4
ggptrc gamma-glutamyl-putrescine C9H20N3O3
glc-D D-Glucose C6H12O6
gln-L L-Glutamine C5H10N2O3
glu5p L-Glutamate 5-phosphate C5H8NO7P
glu5sa L-Glutamate 5-semialdehyde C5H9NO3
glu-L L-Glutamate C5H8NO4
glx Glyoxylate C2HO3
gly Glycine C2H5NO2
glyc Glycerol C3H8O3
glyc3p Glycerol 3-phosphate C3H7O6P
glycogen glycogen C6H10O5
gthrd Reduced glutathione C10H16N3O6S
gtp GTP C10H12N5O14P3
h H+ H
h2o H2O H2O
h2o2 Hydrogen peroxide H2O2
h2s Hydrogen sulfide H2S
hco3 Bicarbonate CHO3
hcys-L L-Homocysteine C4H9NO2S
hdca Hexadecanoate (n-C16:0) C16H31O2
hdcea Hexadecenoate (n-C16:1) C16H29O2
hdcoa Hexadecenoyl-CoA (n-C16:1CoA) C37H60N7O17P3S
hdd2coa trans-Hexadec-2-enoyl-CoA C37H60N7O17P3S
hdeACP cis-hexadec-9-enoyl-[acyl-carrier protein] (n-C16:1) C27H49N2O8PRS
hexACP Hexanoyl-ACP (n-C6:0ACP) C17H31N2O8PRS
his-L L-Histidine C6H9N3O2
hisp L-Histidinol phosphate C6H11N3O4P
histd L-Histidinol C6H12N3O
hom-L L-Homoserine C4H9NO3
hx2coa trans-Hex-2-enoyl-CoA C27H40N7O17P3S
hxa Hexanoate (n-C6:0) C6H11O2
hxcoa Hexanoyl-CoA (n-C6:0CoA) C27H42N7O17P3S
icit Isocitrate C6H5O7
ile-L L-Isoleucine C6H13NO2
imacp 3-(Imidazol-4-yl)-2-oxopropyl phosphate C6H7N2O5P
imp IMP C10H11N4O8P
lac-D D-Lactate C3H5O3
leu-L L-Leucine C6H13NO2
lgt-S (R)-S-Lactoylglutathione C13H20N3O8S
lys-L L-Lysine C6H15N2O2
mal-L L-Malate C4H4O5
malACP Malonyl-[acyl-carrier protein] C14H22N2O10PRS
malcoa Malonyl-CoA C24H33N7O19P3S
met-L L-Methionine C5H11NO2S
mlthf 5,10-Methylenetetrahydrofolate C20H21N7O6
mthgxl Methylglyoxal C3H4O2
myrsACP Myristoyl-ACP (n-C14:0ACP) C25H47N2O8PRS
nad Nicotinamide adenine dinucleotide C21H26N7O14P2
nadh Nicotinamide adenine dinucleotide - reduced C21H27N7O14P2
nadp Nicotinamide adenine dinucleotide phosphate C21H25N7O17P3
nadph Nicotinamide adenine dinucleotide phosphate - reduced C21H26N7O17P3
nh4 Ammonium H4N
o2 O2 O2
oaa Oxaloacetate C4H2O5
oc2coa trans-Oct-2-enoyl-CoA C29H44N7O17P3S
ocACP Octanoyl-ACP (n-C8:0ACP) C19H35N2O8PRS
occoa Octanoyl-CoA (n-C8:0CoA) C29H46N7O17P3S
ocdca octadecanoate (n-C18:0) C18H35O2
ocdcaACP Octadecanoyl-ACP (n-C18:0ACP) C29H55N2O8PRS
ocdcea octadecenoate (n-C18:1) C18H33O2
octa octanoate (n-C8:0) C8H15O2
octeACP cis-octadec-11-enoyl-[acyl-carrier protein] (n-C18:1) C29H53N2O8PRS
od2coa trans-Octadec-2-enoyl-CoA C39H64N7O17P3S
odecoa Octadecenoyl-CoA (n-C18:1CoA) C39H64N7O17P3S
orn Ornithine C5H13N2O2
palmACP Palmitoyl-ACP (n-C16:0ACP) C27H51N2O8PRS
pep Phosphoenolpyruvate C3H2O6P
phe-L L-Phenylalanine C9H11NO2
phom O-Phospho-L-homoserine C4H8NO6P
phpyr Phenylpyruvate C9H7O3
pi Phosphate HO4P
pmtcoa Palmitoyl-CoA (n-C16:0CoA) C37H62N7O17P3S
pphn Prephenate C10H8O6
ppi Diphosphate HO7P2
pram 5-Phospho-beta-D-ribosylamine C5H11NO7P
pran N-(5-Phospho-D-ribosyl)anthranilate C12H13NO9P
prbamp 1-(5-Phosphoribosyl)-AMP C15H19N5O14P2
prbatp 1-(5-Phosphoribosyl)-ATP C15H19N5O20P4
prfp 1-(5-Phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide C15H21N5O15P2
prlp 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4-carboxamide C15H21N5O15P2
pro-L L-Proline C5H9NO2
prpp 5-Phospho-alpha-D-ribose 1-diphosphate C5H8O14P3
pser-L O-Phospho-L-serine C3H6NO6P
ptrc Putrescine C4H14N2
pyr Pyruvate C3H3O3
q8 Ubiquinone-8 C49H74O4
q8h2 Ubiquinol-8 C49H76O4
r5p alpha-D-Ribose 5-phosphate C5H9O8P
rib-D D-Ribose C5H10O5
ru5p-D D-Ribulose 5-phosphate C5H9O8P
s7p Sedoheptulose 7-phosphate C7H13O10P
ser-D D-Serine C3H7NO3
ser-L L-Serine C3H7NO3
skm Shikimate C7H9O5
skm5p Shikimate 5-phosphate C7H8O8P
sl2a6o N-Succinyl-2-L-amino-6-oxoheptanedioate C11H12NO8
sl26da N-Succinyl-LL-2,6-diaminoheptanedioate C11H16N2O7
stcoa Stearoyl-CoA (n-C18:0CoA) C39H66N7O17P3S
sucarg N2-Succinyl-L-arginine C10H17N4O5
succ Succinate C4H4O4
succoa Succinyl-CoA C25H35N7O19P3S
sucglu N2-Succinyl-L-glutamate C9H10NO7
suchms O-Succinyl-L-homoserine C8H12NO6
sucorn N2-Succinyl-L-ornithine C9H15N2O5
sucsal Succinic semialdehyde C4H5O3
t3c5ddeceACP trans-3-cis-5-dodecenoyl-[acyl-carrier protein] C23H39N2O8PRS
t3c7mrseACP trans-3-cis-7-myristoleoyl-[acyl-carrier protein] C25H43N2O8PRS
t3c9palmeACP trans-3-cis-9-palmitoleoyl-[acyl-carrier protein] C27H47N2O8PRS
t3c11vaceACP trans-3-cis-11-vacceoyl-[acyl-carrier protein] C29H51N2O8PRS
td2coa trans-Tetradec-2-enoyl-CoA C35H56N7O17P3S
tdcoa Tetradecanoyl-CoA (n-C14:0CoA) C35H58N7O17P3S
tddec2eACP trans-Dodec-2-enoyl-[acyl-carrier protein] C23H41N2O8PRS
tdeACP cis-tetradec-7-enoyl-[acyl-carrier protein] (n-C14:1) C25H45N2O8PRS
tdec2eACP trans-Dec-2-enoyl-[acyl-carrier protein] C21H37N2O8PRS
tdecoa Tetradecenoyl-CoA (n-C14:1CoA) C35H56N7O17P3S
thdp 2,3,4,5-Tetrahydrodipicolinate C7H7NO4
thex2eACP trans-Hex-2-enoyl-[acyl-carrier protein] C17H29N2O8PRS
thf 5,6,7,8-Tetrahydrofolate C19H21N7O6
thr-L L-Threonine C4H9NO3
tmrs2eACP trans-Tetradec-2-enoyl-[acyl-carrier protein] C25H45N2O8PRS
toct2eACP trans-Oct-2-enoyl-[acyl-carrier protein] C19H33N2O8PRS
toctd2eACP trans-octadec-2-enoyl-[acyl-carrier protein] C29H53N2O8PRS
tpalm2eACP trans-Hexadec-2-enoyl-[acyl-carrier protein] C27H49N2O8PRS
trp-L L-Tryptophan C11H12N2O2
ttdca tetradecanoate (n-C14:0) C14H27O2
ttdcea tetradecenoate (n-C14:1) C14H25O2
tyr-L L-Tyrosine C9H11NO3
urea Urea CH4N2O
val-L L-Valine C5H11NO2
xu5p-D D-Xylulose 5-phosphate C5H9O8P