examples/kinetic_metabolic_model/notes.txt
- Errors/inconsistencies
- Col F: inconsistent reaction syntax; inconsistent species ids with the `Metabolite_List` worksheet
- Col J: inconsistent Km syntax
- H167, H171, D229, E229, E378, E79: wrong type of content (perhaps content has mistakenly been shifted to an adjacent cell)
- K83, K201, K430: typos
- G55, G190: unmormalized schema allows inconsistent values of the same information in the `Regulation_List` worksheet --> confusion about which value is correct (E273, E274)
- Compartments
- Explicitly defined compartments
- Metabolites
- `toct2eACP_c` is repeated
- `Formula` heading is mispelled
- 1 instance of `acetylco` has wrong name and formula
- Undefined metabolites
- Reactions
- Typos in column headings
- Typos in regulation type enumeratios
- Reaction ASPTA repeated
- Inconsistent syntax for equations
- Some reactions has missing or incomplete species compartmentalization
- Inconsistent syntax for species compartments
- Missing final cells in many of the kinetics tables
- Regulations
- Imprecise metabolite regulations (acon vs acon_C; missing compartmentalization)
- 3 repeated regulations
- Biomass coupled reactions
- Content repeated from Reaction worksheet