KarrLab/obj_tables

View on GitHub
examples/sbtab/ecoli_noor_2016_model.csv/Position.csv

Summary

Maintainability
Test Coverage
!!ObjTables schema='SBtab' type='Data' tableFormat='row' class='Position' name='Position' date='2020-07-18 12:19:27' objTablesVersion='1.0.5' document='E. coli central carbon metabolism - unbalanced kinetic data',,
!Element,!PositionX,!PositionY
_S__Malate,0.32772,0.095058
Acetyl_CoA,0.359426,0.22902
Fumarate,0.362438,-0.001611
cis_Aconitate,0.561709,0.210402
_6_Phospho_D_gluconate,0.616335,0.956914
Orthophosphate,0.056437,0.637639
Pyruvate,0.352063,0.308997
NADPplus,0.059533,0.388417
NADPH,0.061081,0.44724
NADH,0.059533,0.561789
NADplus,0.057985,0.506062
ATP,0.056437,0.698009
H2O,0.448708,0.128361
_2_Oxoglutarate,0.643751,0.055607
Oxaloacetate,0.355831,0.176347
Ubiquinone,0.331064,-0.009408
D_Erythrose_4_phosphate,0.503642,0.870531
Ubiquinol,0.317132,-0.032627
ADP,0.054889,0.758379
Isocitrate,0.637559,0.137648
D_Ribulose_5_phosphate,0.668449,0.871147
D_Xylulose_5_phosphate,0.60891,0.841377
D_Glucose_6_phosphate,0.351859,0.965424
_3_Phospho_D_glyceroyl_phosphate,0.352021,0.64203
CoA,0.391786,0.278709
CO2,0.544682,0.123717
D_Ribose_5_phosphate,0.613611,0.76147
Glycerone_phosphate,0.267748,0.745939
D_Glucose,0.110615,0.965805
D_Fructose_1_6_bisphosphate,0.351859,0.828211
D_Glyceraldehyde_3_phosphate,0.352021,0.721029
Phosphoenolpyruvate,0.352007,0.406884
Citrate,0.445962,0.220921
Succinyl_CoA,0.586477,-0.018695
_3_Phospho_D_glycerate,0.352021,0.569228
D_Glucono_1_5_lactone_6_phosphate,0.493599,0.982833
D_Fructose_6_phosphate,0.351859,0.895258
_2_Phospho_D_glycerate,0.352021,0.485582
Succinate,0.465736,-0.051202
Sedoheptulose_7_phosphate,0.574673,0.821603
PTS_RPTSsy,0.181365,0.96522
PGI_R02740,0.352063,0.923947
PFK_R04779,0.333521,0.858996
ALD_R01070,0.352021,0.790734
TIM_R01015,0.297009,0.716584
GAP_R01061,0.351954,0.683129
PGK_R01512,0.352471,0.606396
PGM_R01518,0.352021,0.524307
PGH_R00658,0.352007,0.437823
PYK_R00200,0.352063,0.353918
PDH_R00209,0.352021,0.265625
ZWF_R00835,0.428585,0.982833
GLH_R02035,0.584929,0.973545
PGD_R01528,0.651221,0.918706
RPI_R01056,0.663749,0.80064
RPE_R01529,0.637113,0.860179
TXT_R01641,0.501711,0.735972
TAL_R08575,0.566723,0.88656
TXT_R01067,0.426938,0.837812
FBP_R00762,0.372405,0.857241
CSN_R00351,0.392982,0.198019
ACN_R01325,0.505983,0.224334
ACN_R01900,0.61434,0.176347
ICD_R00709,0.645299,0.100497
KGD_R08549,0.62208,0.016908
SCS_R00405,0.535394,-0.037271
SDH_R02164,0.402092,-0.03917
FUM_R01082,0.340351,0.035483
MDH_R00342,0.33416,0.140744
PPC_R00345,0.40095304,0.50690003
_S__Malate,0.32772,0.095058
Acetyl_CoA,0.359426,0.22902
Fumarate,0.362438,-0.001611
cis_Aconitate,0.561709,0.210402
_6_Phospho_D_gluconate,0.616335,0.956914
Orthophosphate,0.056437,0.637639
Pyruvate,0.352063,0.308997
NADPplus,0.059533,0.388417
NADPH,0.061081,0.44724
NADH,0.059533,0.561789
NADplus,0.057985,0.506062
ATP,0.056437,0.698009
H2O,0.448708,0.128361
_2_Oxoglutarate,0.643751,0.055607
Oxaloacetate,0.355831,0.176347
Ubiquinone,0.331064,-0.009408
D_Erythrose_4_phosphate,0.503642,0.870531
Ubiquinol,0.317132,-0.032627
ADP,0.054889,0.758379
Isocitrate,0.637559,0.137648
D_Ribulose_5_phosphate,0.668449,0.871147
D_Xylulose_5_phosphate,0.60891,0.841377
D_Glucose_6_phosphate,0.351859,0.965424
_3_Phospho_D_glyceroyl_phosphate,0.352021,0.64203
CoA,0.391786,0.278709
CO2,0.544682,0.123717
D_Ribose_5_phosphate,0.613611,0.76147
Glycerone_phosphate,0.267748,0.745939
D_Glucose,0.110615,0.965805
D_Fructose_1_6_bisphosphate,0.351859,0.828211
D_Glyceraldehyde_3_phosphate,0.352021,0.721029
Phosphoenolpyruvate,0.352007,0.406884
Citrate,0.445962,0.220921
Succinyl_CoA,0.586477,-0.018695
_3_Phospho_D_glycerate,0.352021,0.569228
D_Glucono_1_5_lactone_6_phosphate,0.493599,0.982833
D_Fructose_6_phosphate,0.351859,0.895258
_2_Phospho_D_glycerate,0.352021,0.485582
Succinate,0.465736,-0.051202
Sedoheptulose_7_phosphate,0.574673,0.821603
PTS_RPTSsy,0.181365,0.96522
PGI_R02740,0.352063,0.923947
PFK_R04779,0.333521,0.858996
ALD_R01070,0.352021,0.790734
TIM_R01015,0.297009,0.716584
GAP_R01061,0.351954,0.683129
PGK_R01512,0.352471,0.606396
PGM_R01518,0.352021,0.524307
PGH_R00658,0.352007,0.437823
PYK_R00200,0.352063,0.353918
PDH_R00209,0.352021,0.265625
ZWF_R00835,0.428585,0.982833
GLH_R02035,0.584929,0.973545
PGD_R01528,0.651221,0.918706
RPI_R01056,0.663749,0.80064
RPE_R01529,0.637113,0.860179
TXT_R01641,0.501711,0.735972
TAL_R08575,0.566723,0.88656
TXT_R01067,0.426938,0.837812
FBP_R00762,0.372405,0.857241
CSN_R00351,0.392982,0.198019
ACN_R01325,0.505983,0.224334
ACN_R01900,0.61434,0.176347
ICD_R00709,0.645299,0.100497
KGD_R08549,0.62208,0.016908
SCS_R00405,0.535394,-0.037271
SDH_R02164,0.402092,-0.03917
FUM_R01082,0.340351,0.035483
MDH_R00342,0.33416,0.140744
PPC_R00345,0.40095304,0.50690003
%,,