KarrLab/obj_tables

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examples/sbtab/ecoli_noor_2016_model.multi.tsv

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!!ObjTables objTablesVersion='0.0.8' schema='SBtab' document='E. coli central carbon metabolism - unbalanced kinetic data' type='Data' class='Reaction'                                
!ID    !ReactionFormula    !Identifiers:kegg.reaction    !IsReversible    !Gene    !NameForPlots            
PTS_RPTSsy    D_Glucose + Phosphoenolpyruvate <=> Pyruvate + D_Glucose_6_phosphate    RPTSsy    TRUE    PTS    pts            
PGI_R02740    D_Glucose_6_phosphate <=> D_Fructose_6_phosphate    R02740    TRUE    PGI    pgi            
PFK_R04779    ATP + D_Fructose_6_phosphate <=> ADP + D_Fructose_1_6_bisphosphate    R04779    TRUE    PFK    pfk            
ALD_R01070    D_Fructose_1_6_bisphosphate <=> Glycerone_phosphate + D_Glyceraldehyde_3_phosphate    R01070    TRUE    FBA    fba            
TIM_R01015    Glycerone_phosphate <=> D_Glyceraldehyde_3_phosphate    R01015    TRUE    TPI    tpi            
GAP_R01061    Orthophosphate + NADplus + D_Glyceraldehyde_3_phosphate <=> NADH + _3_Phospho_D_glyceroyl_phosphate    R01061    TRUE    GAP    gap            
PGK_R01512    ADP + _3_Phospho_D_glyceroyl_phosphate <=> ATP + _3_Phospho_D_glycerate    R01512    TRUE    PGK    pgk            
PGM_R01518    _3_Phospho_D_glycerate <=> _2_Phospho_D_glycerate    R01518    TRUE    GPM    gpm            
PGH_R00658    _2_Phospho_D_glycerate <=> Phosphoenolpyruvate    R00658    TRUE    ENO    eno            
PYK_R00200    ADP + Phosphoenolpyruvate <=> Pyruvate + ATP    R00200    TRUE    PYK    pyk            
PDH_R00209    Pyruvate + NADplus + CoA <=> Acetyl_CoA + NADH + CO2    R00209    TRUE    PDH    pdh            
ZWF_R00835    NADPplus + D_Glucose_6_phosphate <=> NADPH + D_Glucono_1_5_lactone_6_phosphate    R00835    TRUE    ZWF    zwf            
GLH_R02035    D_Glucono_1_5_lactone_6_phosphate <=> _6_Phospho_D_gluconate    R02035    TRUE    PGL    pgl            
PGD_R01528    _6_Phospho_D_gluconate + NADPplus <=> NADPH + D_Ribulose_5_phosphate + CO2    R01528    TRUE    GND    gnd            
RPI_R01056    D_Ribulose_5_phosphate <=> D_Ribose_5_phosphate    R01056    TRUE    RPI    rpi            
RPE_R01529    D_Ribulose_5_phosphate <=> D_Xylulose_5_phosphate    R01529    TRUE    RPE    rpe            
TXT_R01641    D_Xylulose_5_phosphate + D_Ribose_5_phosphate <=> D_Glyceraldehyde_3_phosphate + Sedoheptulose_7_phosphate    R01641    TRUE    TKT1    tkt1            
TAL_R08575    D_Glyceraldehyde_3_phosphate + Sedoheptulose_7_phosphate <=> D_Erythrose_4_phosphate + D_Fructose_6_phosphate    R08575    TRUE    TAL    tal            
TXT_R01067    D_Erythrose_4_phosphate + D_Xylulose_5_phosphate <=> D_Glyceraldehyde_3_phosphate + D_Fructose_6_phosphate    R01067    TRUE    TKT2    tkt2            
FBP_R00762    D_Fructose_1_6_bisphosphate <=> Orthophosphate + D_Fructose_6_phosphate    R00762    TRUE    FBP    fbp            
CSN_R00351    Acetyl_CoA + Oxaloacetate <=> CoA + Citrate    R00351    TRUE    CSN    csn            
ACN_R01325    Citrate <=> cis_Aconitate    R01325    TRUE    ACN1    acn1            
ACN_R01900    cis_Aconitate <=> Isocitrate    R01900    TRUE    ACN2    acn2            
ICD_R00709    NADplus + Isocitrate <=> NADH + _2_Oxoglutarate + CO2    R00709    TRUE    ICD    icd            
KGD_R08549    NADplus + _2_Oxoglutarate + CoA <=> NADH + CO2 + Succinyl_CoA    R08549    TRUE    KGD    kgd            
SCS_R00405    Orthophosphate + ADP + Succinyl_CoA <=> ATP + CoA + Succinate    R00405    TRUE    SCS    scs            
SDH_R02164    Ubiquinone + Succinate <=> Fumarate + Ubiquinol    R02164    TRUE    SDH    sdh            
FUM_R01082    Fumarate <=> _S__Malate    R01082    TRUE    FUM    fum            
MDH_R00342    _S__Malate + NADplus <=> NADH + Oxaloacetate    R00342    TRUE    MDH    mdh            
PPC_R00345    Orthophosphate + Oxaloacetate <=> CO2 + Phosphoenolpyruvate    R00345    TRUE    PPC    ppc            
%                                
!!ObjTables objTablesVersion='0.0.8' schema='SBtab' document='E. coli central carbon metabolism - unbalanced kinetic data' type='Data' class='Compound'                                
!ID    !Name    !Identifiers:kegg.compound    !IsConstant    !NameForPlots                
_S__Malate    (S)-Malate    C00149    FALSE    (S)-Malate                
Acetyl_CoA    Acetyl-CoA    C00024    FALSE    Acetyl-CoA                
Fumarate    Fumarate    C00122    FALSE    Fumarate                
cis_Aconitate    cis-Aconitate    C00417    FALSE    cis-Aconitate                
_6_Phospho_D_gluconate    6-Phospho-D-gluconate    C00345    FALSE    6-Phospho-D-gluconate                
Orthophosphate    Orthophosphate    C00009    TRUE    Orthophosphate                
Pyruvate    Pyruvate    C00022    FALSE    Pyruvate                
NADPplus    NADP+    C00006    TRUE    NADP+                
NADPH    NADPH    C00005    TRUE    NADPH                
NADH    NADH    C00004    TRUE    NADH                
NADplus    NAD+    C00003    TRUE    NAD+                
ATP    ATP    C00002    TRUE    ATP                
H2O    H2O    C00001    TRUE    H2O                
_2_Oxoglutarate    2-Oxoglutarate    C00026    FALSE    2-Oxoglutarate                
Oxaloacetate    Oxaloacetate    C00036    TRUE    Oxaloacetate                
Ubiquinone    Ubiquinone    C00399    TRUE    Ubiquinone                
D_Erythrose_4_phosphate    D-Erythrose 4-phosphate    C00279    FALSE    D-Erythrose 4-phosphate                
Ubiquinol    Ubiquinol    C00390    TRUE    Ubiquinol                
ADP    ADP    C00008    TRUE    ADP                
Isocitrate    Isocitrate    C00311    FALSE    Isocitrate                
D_Ribulose_5_phosphate    D-Ribulose 5-phosphate    C00199    FALSE    D-Ribulose 5-phosphate                
D_Xylulose_5_phosphate    D-Xylulose 5-phosphate    C00231    FALSE    D-Xylulose 5-phosphate                
D_Glucose_6_phosphate    D-Glucose 6-phosphate    C00092    TRUE    D-Glucose 6-phosphate                
_3_Phospho_D_glyceroyl_phosphate    3-Phospho-D-glyceroyl phosphate    C00236    FALSE    3-Phospho-D-glyceroyl phosphate                
CoA    CoA    C00010    FALSE    CoA                
CO2    CO2    C00011    TRUE    CO2                
D_Ribose_5_phosphate    D-Ribose 5-phosphate    C00117    FALSE    D-Ribose 5-phosphate                
Glycerone_phosphate    Glycerone phosphate    C00111    FALSE    Glycerone phosphate                
D_Glucose    D-Glucose    C00031    TRUE    D-Glucose                
D_Fructose_1_6_bisphosphate    "D-Fructose 1,6-bisphosphate"    C00354    TRUE    "D-Fructose 1,6-bisphosphate"                
D_Glyceraldehyde_3_phosphate    D-Glyceraldehyde 3-phosphate    C00118    TRUE    D-Glyceraldehyde 3-phosphate                
Phosphoenolpyruvate    Phosphoenolpyruvate    C00074    TRUE    Phosphoenolpyruvate                
Citrate    Citrate    C00158    FALSE    Citrate                
Succinyl_CoA    Succinyl-CoA    C00091    FALSE    Succinyl-CoA                
_3_Phospho_D_glycerate    3-Phospho-D-glycerate    C00197    FALSE    3-Phospho-D-glycerate                
D_Glucono_1_5_lactone_6_phosphate    "D-Glucono-1,5-lactone 6-phosphate"    C01236    FALSE    "D-Glucono-1,5-lactone 6-phosphate"                
D_Fructose_6_phosphate    D-Fructose 6-phosphate    C00085    TRUE    D-Fructose 6-phosphate                
_2_Phospho_D_glycerate    2-Phospho-D-glycerate    C00631    FALSE    2-Phospho-D-glycerate                
Succinate    Succinate    C00042    FALSE    Succinate                
Sedoheptulose_7_phosphate    Sedoheptulose 7-phosphate    C05382    FALSE    Sedoheptulose 7-phosphate                
                    
%                                
!!ObjTables objTablesVersion='0.0.8' schema='SBtab' document='E. coli central carbon metabolism - unbalanced kinetic data' type='Data' class='Position' description='Layout'                                
!Element    !PositionX    !PositionY                        
_S__Malate    0.32772    0.095058                        
Acetyl_CoA    0.359426    0.22902                        
Fumarate    0.362438    -0.001611                        
cis_Aconitate    0.561709    0.210402                        
_6_Phospho_D_gluconate    0.616335    0.956914                        
Orthophosphate    0.056437    0.637639                        
Pyruvate    0.352063    0.308997                        
NADPplus    0.059533    0.388417                        
NADPH    0.061081    0.44724                        
NADH    0.059533    0.561789                        
NADplus    0.057985    0.506062                        
ATP    0.056437    0.698009                        
H2O    0.448708    0.128361                        
_2_Oxoglutarate    0.643751    0.055607                        
Oxaloacetate    0.355831    0.176347                        
Ubiquinone    0.331064    -0.009408                        
D_Erythrose_4_phosphate    0.503642    0.870531                        
Ubiquinol    0.317132    -0.032627                        
ADP    0.054889    0.758379                        
Isocitrate    0.637559    0.137648                        
D_Ribulose_5_phosphate    0.668449    0.871147                        
D_Xylulose_5_phosphate    0.60891    0.841377                        
D_Glucose_6_phosphate    0.351859    0.965424                        
_3_Phospho_D_glyceroyl_phosphate    0.352021    0.64203                        
CoA    0.391786    0.278709                        
CO2    0.544682    0.123717                        
D_Ribose_5_phosphate    0.613611    0.76147                        
Glycerone_phosphate    0.267748    0.745939                        
D_Glucose    0.110615    0.965805                        
D_Fructose_1_6_bisphosphate    0.351859    0.828211                        
D_Glyceraldehyde_3_phosphate    0.352021    0.721029                        
Phosphoenolpyruvate    0.352007    0.406884                        
Citrate    0.445962    0.220921                        
Succinyl_CoA    0.586477    -0.018695                        
_3_Phospho_D_glycerate    0.352021    0.569228                        
D_Glucono_1_5_lactone_6_phosphate    0.493599    0.982833                        
D_Fructose_6_phosphate    0.351859    0.895258                        
_2_Phospho_D_glycerate    0.352021    0.485582                        
Succinate    0.465736    -0.051202                        
Sedoheptulose_7_phosphate    0.574673    0.821603                        
PTS_RPTSsy    0.181365    0.96522                        
PGI_R02740    0.352063    0.923947                        
PFK_R04779    0.333521    0.858996                        
ALD_R01070    0.352021    0.790734                        
TIM_R01015    0.297009    0.716584                        
GAP_R01061    0.351954    0.683129                        
PGK_R01512    0.352471    0.606396                        
PGM_R01518    0.352021    0.524307                        
PGH_R00658    0.352007    0.437823                        
PYK_R00200    0.352063    0.353918                        
PDH_R00209    0.352021    0.265625                        
ZWF_R00835    0.428585    0.982833                        
GLH_R02035    0.584929    0.973545                        
PGD_R01528    0.651221    0.918706                        
RPI_R01056    0.663749    0.80064                        
RPE_R01529    0.637113    0.860179                        
TXT_R01641    0.501711    0.735972                        
TAL_R08575    0.566723    0.88656                        
TXT_R01067    0.426938    0.837812                        
FBP_R00762    0.372405    0.857241                        
CSN_R00351    0.392982    0.198019                        
ACN_R01325    0.505983    0.224334                        
ACN_R01900    0.61434    0.176347                        
ICD_R00709    0.645299    0.100497                        
KGD_R08549    0.62208    0.016908                        
SCS_R00405    0.535394    -0.037271                        
SDH_R02164    0.402092    -0.03917                        
FUM_R01082    0.340351    0.035483                        
MDH_R00342    0.33416    0.140744                        
PPC_R00345    0.40095304    0.50690003                        
_S__Malate    0.32772    0.095058                        
Acetyl_CoA    0.359426    0.22902                        
Fumarate    0.362438    -0.001611                        
cis_Aconitate    0.561709    0.210402                        
_6_Phospho_D_gluconate    0.616335    0.956914                        
Orthophosphate    0.056437    0.637639                        
Pyruvate    0.352063    0.308997                        
NADPplus    0.059533    0.388417                        
NADPH    0.061081    0.44724                        
NADH    0.059533    0.561789                        
NADplus    0.057985    0.506062                        
ATP    0.056437    0.698009                        
H2O    0.448708    0.128361                        
_2_Oxoglutarate    0.643751    0.055607                        
Oxaloacetate    0.355831    0.176347                        
Ubiquinone    0.331064    -0.009408                        
D_Erythrose_4_phosphate    0.503642    0.870531                        
Ubiquinol    0.317132    -0.032627                        
ADP    0.054889    0.758379                        
Isocitrate    0.637559    0.137648                        
D_Ribulose_5_phosphate    0.668449    0.871147                        
D_Xylulose_5_phosphate    0.60891    0.841377                        
D_Glucose_6_phosphate    0.351859    0.965424                        
_3_Phospho_D_glyceroyl_phosphate    0.352021    0.64203                        
CoA    0.391786    0.278709                        
CO2    0.544682    0.123717                        
D_Ribose_5_phosphate    0.613611    0.76147                        
Glycerone_phosphate    0.267748    0.745939                        
D_Glucose    0.110615    0.965805                        
D_Fructose_1_6_bisphosphate    0.351859    0.828211                        
D_Glyceraldehyde_3_phosphate    0.352021    0.721029                        
Phosphoenolpyruvate    0.352007    0.406884                        
Citrate    0.445962    0.220921                        
Succinyl_CoA    0.586477    -0.018695                        
_3_Phospho_D_glycerate    0.352021    0.569228                        
D_Glucono_1_5_lactone_6_phosphate    0.493599    0.982833                        
D_Fructose_6_phosphate    0.351859    0.895258                        
_2_Phospho_D_glycerate    0.352021    0.485582                        
Succinate    0.465736    -0.051202                        
Sedoheptulose_7_phosphate    0.574673    0.821603                        
PTS_RPTSsy    0.181365    0.96522                        
PGI_R02740    0.352063    0.923947                        
PFK_R04779    0.333521    0.858996                        
ALD_R01070    0.352021    0.790734                        
TIM_R01015    0.297009    0.716584                        
GAP_R01061    0.351954    0.683129                        
PGK_R01512    0.352471    0.606396                        
PGM_R01518    0.352021    0.524307                        
PGH_R00658    0.352007    0.437823                        
PYK_R00200    0.352063    0.353918                        
PDH_R00209    0.352021    0.265625                        
ZWF_R00835    0.428585    0.982833                        
GLH_R02035    0.584929    0.973545                        
PGD_R01528    0.651221    0.918706                        
RPI_R01056    0.663749    0.80064                        
RPE_R01529    0.637113    0.860179                        
TXT_R01641    0.501711    0.735972                        
TAL_R08575    0.566723    0.88656                        
TXT_R01067    0.426938    0.837812                        
FBP_R00762    0.372405    0.857241                        
CSN_R00351    0.392982    0.198019                        
ACN_R01325    0.505983    0.224334                        
ACN_R01900    0.61434    0.176347                        
ICD_R00709    0.645299    0.100497                        
KGD_R08549    0.62208    0.016908                        
SCS_R00405    0.535394    -0.037271                        
SDH_R02164    0.402092    -0.03917                        
FUM_R01082    0.340351    0.035483                        
MDH_R00342    0.33416    0.140744                        
PPC_R00345    0.40095304    0.50690003                        
%                                
!!ObjTables objTablesVersion='0.0.8' schema='SBtab' document='E. coli central carbon metabolism - unbalanced kinetic data' type='Data' class='Quantity'                                
!QuantityType    !Compound    !Compound:Identifiers:kegg.compound    !Concentration:Min    !Concentration:Max    !Reaction    !Reaction:Identifiers:kegg.reaction    !Value    !Unit
equilibrium constant                    PTS_RPTSsy    RPTSsy    57262184    dimensionless
equilibrium constant                    PGI_R02740    R02740    0.36350845    dimensionless
equilibrium constant                    PFK_R04779    R04779    1764.8694    dimensionless
equilibrium constant                    ALD_R01070    R01070    0.1889019    dimensionless
equilibrium constant                    TIM_R01015    R01015    0.10733371    dimensionless
equilibrium constant                    GAP_R01061    R01061    0.000351805    dimensionless
equilibrium constant                    PGK_R01512    R01512    1883.7137    dimensionless
equilibrium constant                    PGM_R01518    R01518    0.1881272    dimensionless
equilibrium constant                    PGH_R00658    R00658    5.202263    dimensionless
equilibrium constant                    PYK_R00200    R00200    22335.814    dimensionless
equilibrium constant                    PDH_R00209    R00209    1670759.7    dimensionless
equilibrium constant                    ZWF_R00835    R00835    12.916734    dimensionless
equilibrium constant                    GLH_R02035    R02035    20744.52    dimensionless
equilibrium constant                    PGD_R01528    R01528    12.330424    dimensionless
equilibrium constant                    RPI_R01056    R01056    2.264296    dimensionless
equilibrium constant                    RPE_R01529    R01529    3.9024941    dimensionless
equilibrium constant                    TXT_R01641    R01641    4.7316932    dimensionless
equilibrium constant                    TAL_R08575    R08575    1.3194676    dimensionless
equilibrium constant                    TXT_R01067    R01067    59.621212    dimensionless
equilibrium constant                    FBP_R00762    R00762    49007.074    dimensionless
equilibrium constant                    CSN_R00351    R00351    5416530.1    dimensionless
equilibrium constant                    ACN_R01325    R01325    0.034861263    dimensionless
equilibrium constant                    ACN_R01900    R01900    1.3190957    dimensionless
equilibrium constant                    ICD_R00709    R00709    100.21644    dimensionless
equilibrium constant                    KGD_R08549    R08549    92567.323    dimensionless
equilibrium constant                    SCS_R00405    R00405    0.58290232    dimensionless
equilibrium constant                    SDH_R02164    R02164    6026.7589    dimensionless
equilibrium constant                    FUM_R01082    R01082    4.0148279    dimensionless
equilibrium constant                    MDH_R00342    R00342    1.94E-05    dimensionless
equilibrium constant                    PPC_R00345    R00345    3.72E-07    dimensionless
catalytic rate constant geometric mean                    PTS_RPTSsy    RPTSsy    NaN    1/s
catalytic rate constant geometric mean                    PGI_R02740    R02740    NaN    1/s
catalytic rate constant geometric mean                    PFK_R04779    R04779    NaN    1/s
catalytic rate constant geometric mean                    ALD_R01070    R01070    NaN    1/s
catalytic rate constant geometric mean                    TIM_R01015    R01015    1060.6602    1/s
catalytic rate constant geometric mean                    GAP_R01061    R01061    172.08719    1/s
catalytic rate constant geometric mean                    PGK_R01512    R01512    236.52354    1/s
catalytic rate constant geometric mean                    PGM_R01518    R01518    117.66974    1/s
catalytic rate constant geometric mean                    PGH_R00658    R00658    NaN    1/s
catalytic rate constant geometric mean                    PYK_R00200    R00200    NaN    1/s
catalytic rate constant geometric mean                    PDH_R00209    R00209    1.7083033    1/s
catalytic rate constant geometric mean                    ZWF_R00835    R00835    315.2047    1/s
catalytic rate constant geometric mean                    GLH_R02035    R02035    NaN    1/s
catalytic rate constant geometric mean                    PGD_R01528    R01528    51.87217    1/s
catalytic rate constant geometric mean                    RPI_R01056    R01056    1128.6376    1/s
catalytic rate constant geometric mean                    RPE_R01529    R01529    487.01987    1/s
catalytic rate constant geometric mean                    TXT_R01641    R01641    NaN    1/s
catalytic rate constant geometric mean                    TAL_R08575    R08575    NaN    1/s
catalytic rate constant geometric mean                    TXT_R01067    R01067    NaN    1/s
catalytic rate constant geometric mean                    FBP_R00762    R00762    NaN    1/s
catalytic rate constant geometric mean                    CSN_R00351    R00351    69.518014    1/s
catalytic rate constant geometric mean                    ACN_R01325    R01325    NaN    1/s
catalytic rate constant geometric mean                    ACN_R01900    R01900    NaN    1/s
catalytic rate constant geometric mean                    ICD_R00709    R00709    56.471232    1/s
catalytic rate constant geometric mean                    KGD_R08549    R08549    NaN    1/s
catalytic rate constant geometric mean                    SCS_R00405    R00405    95.468278    1/s
catalytic rate constant geometric mean                    SDH_R02164    R02164    82.509888    1/s
catalytic rate constant geometric mean                    FUM_R01082    R01082    217.26756    1/s
catalytic rate constant geometric mean                    MDH_R00342    R00342    485.6488    1/s
catalytic rate constant geometric mean                    PPC_R00345    R00345    NaN    1/s
Michaelis constant    _S__Malate    C00149            FUM_R01082    R01082    0.64666009    mM
Michaelis constant    _S__Malate    C00149            MDH_R00342    R00342    0.59870169    mM
Michaelis constant    Acetyl_CoA    C00024            PDH_R00209    R00209    0.030581258    mM
Michaelis constant    Acetyl_CoA    C00024            CSN_R00351    R00351    0.050864382    mM
Michaelis constant    Fumarate    C00122            SDH_R02164    R02164    0.10381729    mM
Michaelis constant    Fumarate    C00122            FUM_R01082    R01082    0.18043722    mM
Michaelis constant    cis_Aconitate    C00417            ACN_R01325    R01325    0.016657922    mM
Michaelis constant    cis_Aconitate    C00417            ACN_R01900    R01900    0.016657922    mM
Michaelis constant    _6_Phospho_D_gluconate    C00345            GLH_R02035    R02035    0.02    mM
Michaelis constant    _6_Phospho_D_gluconate    C00345            PGD_R01528    R01528    0.017811853    mM
Michaelis constant    Orthophosphate    C00009            GAP_R01061    R01061    1    mM
Michaelis constant    Orthophosphate    C00009            FBP_R00762    R00762    NaN    mM
Michaelis constant    Orthophosphate    C00009            SCS_R00405    R00405    1.003992    mM
Michaelis constant    Orthophosphate    C00009            PPC_R00345    R00345    NaN    mM
Michaelis constant    Pyruvate    C00022            PTS_RPTSsy    RPTSsy    NaN    mM
Michaelis constant    Pyruvate    C00022            PYK_R00200    R00200    0.31    mM
Michaelis constant    Pyruvate    C00022            PDH_R00209    R00209    0.01    mM
Michaelis constant    NADPplus    C00006            ZWF_R00835    R00835    0.007    mM
Michaelis constant    NADPplus    C00006            PGD_R01528    R01528    0.016784756    mM
Michaelis constant    NADPH    C00005            ZWF_R00835    R00835    0.007    mM
Michaelis constant    NADPH    C00005            PGD_R01528    R01528    0.000663325    mM
Michaelis constant    NADH    C00004            GAP_R01061    R01061    0.059    mM
Michaelis constant    NADH    C00004            PDH_R00209    R00209    NaN    mM
Michaelis constant    NADH    C00004            ICD_R00709    R00709    NaN    mM
Michaelis constant    NADH    C00004            KGD_R08549    R08549    NaN    mM
Michaelis constant    NADH    C00004            MDH_R00342    R00342    0.027138618    mM
Michaelis constant    NADplus    C00003            GAP_R01061    R01061    0.09    mM
Michaelis constant    NADplus    C00003            PDH_R00209    R00209    0.041024383    mM
Michaelis constant    NADplus    C00003            ICD_R00709    R00709    0.08    mM
Michaelis constant    NADplus    C00003            KGD_R08549    R08549    NaN    mM
Michaelis constant    NADplus    C00003            MDH_R00342    R00342    0.12812311    mM
Michaelis constant    ATP    C00002            PFK_R04779    R04779    0.12    mM
Michaelis constant    ATP    C00002            PGK_R01512    R01512    0.48    mM
Michaelis constant    ATP    C00002            PYK_R00200    R00200    0.25    mM
Michaelis constant    ATP    C00002            SCS_R00405    R00405    0.090092484    mM
Michaelis constant    _2_Oxoglutarate    C00026            ICD_R00709    R00709    NaN    mM
Michaelis constant    _2_Oxoglutarate    C00026            KGD_R08549    R08549    4    mM
Michaelis constant    Oxaloacetate    C00036            CSN_R00351    R00351    0.033920097    mM
Michaelis constant    Oxaloacetate    C00036            MDH_R00342    R00342    0.034479991    mM
Michaelis constant    Oxaloacetate    C00036            PPC_R00345    R00345    NaN    mM
Michaelis constant    Ubiquinone    C00399            SDH_R02164    R02164    0.037084298    mM
Michaelis constant    D_Erythrose_4_phosphate    C00279            TAL_R08575    R08575    0.031862242    mM
Michaelis constant    D_Erythrose_4_phosphate    C00279            TXT_R01067    R01067    0.36    mM
Michaelis constant    Ubiquinol    C00390            SDH_R02164    R02164    NaN    mM
Michaelis constant    ADP    C00008            PFK_R04779    R04779    0.82825117    mM
Michaelis constant    ADP    C00008            PGK_R01512    R01512    0.2    mM
Michaelis constant    ADP    C00008            PYK_R00200    R00200    0.25    mM
Michaelis constant    ADP    C00008            SCS_R00405    R00405    0.061357924    mM
Michaelis constant    Isocitrate    C00311            ACN_R01900    R01900    0.19745878    mM
Michaelis constant    Isocitrate    C00311            ICD_R00709    R00709    2.4    mM
Michaelis constant    D_Ribulose_5_phosphate    C00199            PGD_R01528    R01528    0.14142136    mM
Michaelis constant    D_Ribulose_5_phosphate    C00199            RPI_R01056    R01056    3.1464265    mM
Michaelis constant    D_Ribulose_5_phosphate    C00199            RPE_R01529    R01529    0.86969557    mM
Michaelis constant    D_Xylulose_5_phosphate    C00231            RPE_R01529    R01529    NaN    mM
Michaelis constant    D_Xylulose_5_phosphate    C00231            TXT_R01641    R01641    0.49    mM
Michaelis constant    D_Xylulose_5_phosphate    C00231            TXT_R01067    R01067    0.49    mM
Michaelis constant    D_Glucose_6_phosphate    C00092            PTS_RPTSsy    RPTSsy    NaN    mM
Michaelis constant    D_Glucose_6_phosphate    C00092            PGI_R02740    R02740    NaN    mM
Michaelis constant    D_Glucose_6_phosphate    C00092            ZWF_R00835    R00835    0.174    mM
Michaelis constant    _3_Phospho_D_glyceroyl_phosphate    C00236            GAP_R01061    R01061    0.05    mM
Michaelis constant    _3_Phospho_D_glyceroyl_phosphate    C00236            PGK_R01512    R01512    0.0018    mM
Michaelis constant    CoA    C00010            PDH_R00209    R00209    0.003464102    mM
Michaelis constant    CoA    C00010            CSN_R00351    R00351    NaN    mM
Michaelis constant    CoA    C00010            KGD_R08549    R08549    NaN    mM
Michaelis constant    CoA    C00010            SCS_R00405    R00405    0.086881013    mM
Michaelis constant    CO2    C00011            PDH_R00209    R00209    NaN    mM
Michaelis constant    CO2    C00011            PGD_R01528    R01528    41.231056    mM
Michaelis constant    CO2    C00011            ICD_R00709    R00709    NaN    mM
Michaelis constant    CO2    C00011            KGD_R08549    R08549    NaN    mM
Michaelis constant    CO2    C00011            PPC_R00345    R00345    0.19    mM
Michaelis constant    D_Ribose_5_phosphate    C00117            RPI_R01056    R01056    2.2    mM
Michaelis constant    D_Ribose_5_phosphate    C00117            TXT_R01641    R01641    0.53    mM
Michaelis constant    Glycerone_phosphate    C00111            ALD_R01070    R01070    0.16124515    mM
Michaelis constant    Glycerone_phosphate    C00111            TIM_R01015    R01015    1    mM
Michaelis constant    D_Glucose    C00031            PTS_RPTSsy    RPTSsy    NaN    mM
Michaelis constant    D_Fructose_1_6_bisphosphate    C00354            PFK_R04779    R04779    NaN    mM
Michaelis constant    D_Fructose_1_6_bisphosphate    C00354            ALD_R01070    R01070    NaN    mM
Michaelis constant    D_Fructose_1_6_bisphosphate    C00354            FBP_R00762    R00762    0.013652535    mM
Michaelis constant    D_Glyceraldehyde_3_phosphate    C00118            ALD_R01070    R01070    0.13076697    mM
Michaelis constant    D_Glyceraldehyde_3_phosphate    C00118            TIM_R01015    R01015    1    mM
Michaelis constant    D_Glyceraldehyde_3_phosphate    C00118            GAP_R01061    R01061    0.21    mM
Michaelis constant    D_Glyceraldehyde_3_phosphate    C00118            TXT_R01641    R01641    4.9    mM
Michaelis constant    D_Glyceraldehyde_3_phosphate    C00118            TAL_R08575    R08575    0.084433137    mM
Michaelis constant    D_Glyceraldehyde_3_phosphate    C00118            TXT_R01067    R01067    4.9    mM
Michaelis constant    Phosphoenolpyruvate    C00074            PTS_RPTSsy    RPTSsy    NaN    mM
Michaelis constant    Phosphoenolpyruvate    C00074            PGH_R00658    R00658    0.3    mM
Michaelis constant    Phosphoenolpyruvate    C00074            PYK_R00200    R00200    0.31    mM
Michaelis constant    Phosphoenolpyruvate    C00074            PPC_R00345    R00345    0.38431493    mM
Michaelis constant    Citrate    C00158            CSN_R00351    R00351    0.001    mM
Michaelis constant    Citrate    C00158            ACN_R01325    R01325    0.73118139    mM
Michaelis constant    Succinyl_CoA    C00091            KGD_R08549    R08549    0.077459667    mM
Michaelis constant    Succinyl_CoA    C00091            SCS_R00405    R00405    0.027912311    mM
Michaelis constant    _3_Phospho_D_glycerate    C00197            PGK_R01512    R01512    0.69    mM
Michaelis constant    _3_Phospho_D_glycerate    C00197            PGM_R01518    R01518    0.65    mM
Michaelis constant    D_Glucono_1_5_lactone_6_phosphate    C01236            ZWF_R00835    R00835    0.174    mM
Michaelis constant    D_Glucono_1_5_lactone_6_phosphate    C01236            GLH_R02035    R02035    0.02    mM
Michaelis constant    D_Fructose_6_phosphate    C00085            PGI_R02740    R02740    NaN    mM
Michaelis constant    D_Fructose_6_phosphate    C00085            PFK_R04779    R04779    NaN    mM
Michaelis constant    D_Fructose_6_phosphate    C00085            TAL_R08575    R08575    0.49559808    mM
Michaelis constant    D_Fructose_6_phosphate    C00085            TXT_R01067    R01067    7    mM
Michaelis constant    D_Fructose_6_phosphate    C00085            FBP_R00762    R00762    NaN    mM
Michaelis constant    _2_Phospho_D_glycerate    C00631            PGM_R01518    R01518    0.041    mM
Michaelis constant    _2_Phospho_D_glycerate    C00631            PGH_R00658    R00658    0.3    mM
Michaelis constant    Succinate    C00042            SCS_R00405    R00405    2.2969796    mM
Michaelis constant    Succinate    C00042            SDH_R02164    R02164    0.11895397    mM
Michaelis constant    Sedoheptulose_7_phosphate    C05382            TXT_R01641    R01641    4    mM
Michaelis constant    Sedoheptulose_7_phosphate    C05382            TAL_R08575    R08575    0.28683033    mM
substrate catalytic rate constant                    PTS_RPTSsy    RPTSsy    15    1/s
substrate catalytic rate constant                    PGI_R02740    R02740    125.62172    1/s
substrate catalytic rate constant                    PFK_R04779    R04779    41.75    1/s
substrate catalytic rate constant                    ALD_R01070    R01070    NaN    1/s
substrate catalytic rate constant                    TIM_R01015    R01015    4500    1/s
substrate catalytic rate constant                    GAP_R01061    R01061    134    1/s
substrate catalytic rate constant                    PGK_R01512    R01512    67.158925    1/s
substrate catalytic rate constant                    PGM_R01518    R01518    530    1/s
substrate catalytic rate constant                    PGH_R00658    R00658    197.83576    1/s
substrate catalytic rate constant                    PYK_R00200    R00200    67    1/s
substrate catalytic rate constant                    PDH_R00209    R00209    37.9    1/s
substrate catalytic rate constant                    ZWF_R00835    R00835    174    1/s
substrate catalytic rate constant                    GLH_R02035    R02035    468    1/s
substrate catalytic rate constant                    PGD_R01528    R01528    27.456347    1/s
substrate catalytic rate constant                    RPI_R01056    R01056    1405.8805    1/s
substrate catalytic rate constant                    RPE_R01529    R01529    1300    1/s
substrate catalytic rate constant                    TXT_R01641    R01641    45    1/s
substrate catalytic rate constant                    TAL_R08575    R08575    6.44    1/s
substrate catalytic rate constant                    TXT_R01067    R01067    69    1/s
substrate catalytic rate constant                    FBP_R00762    R00762    NaN    1/s
substrate catalytic rate constant                    CSN_R00351    R00351    40.499408    1/s
substrate catalytic rate constant                    ACN_R01325    R01325    3.3    1/s
substrate catalytic rate constant                    ACN_R01900    R01900    3.3    1/s
substrate catalytic rate constant                    ICD_R00709    R00709    106.3    1/s
substrate catalytic rate constant                    KGD_R08549    R08549    NaN    1/s
substrate catalytic rate constant                    SCS_R00405    R00405    201    1/s
substrate catalytic rate constant                    SDH_R02164    R02164    85.572486    1/s
substrate catalytic rate constant                    FUM_R01082    R01082    409.59643    1/s
substrate catalytic rate constant                    MDH_R00342    R00342    1034.7807    1/s
substrate catalytic rate constant                    PPC_R00345    R00345    270    1/s
product catalytic rate constant                    PTS_RPTSsy    RPTSsy    NaN    1/s
product catalytic rate constant                    PGI_R02740    R02740    NaN    1/s
product catalytic rate constant                    PFK_R04779    R04779    NaN    1/s
product catalytic rate constant                    ALD_R01070    R01070    NaN    1/s
product catalytic rate constant                    TIM_R01015    R01015    250    1/s
product catalytic rate constant                    GAP_R01061    R01061    221    1/s
product catalytic rate constant                    PGK_R01512    R01512    833    1/s
product catalytic rate constant                    PGM_R01518    R01518    26.124843    1/s
product catalytic rate constant                    PGH_R00658    R00658    NaN    1/s
product catalytic rate constant                    PYK_R00200    R00200    NaN    1/s
product catalytic rate constant                    PDH_R00209    R00209    0.077    1/s
product catalytic rate constant                    ZWF_R00835    R00835    571    1/s
product catalytic rate constant                    GLH_R02035    R02035    NaN    1/s
product catalytic rate constant                    PGD_R01528    R01528    98    1/s
product catalytic rate constant                    RPI_R01056    R01056    906.06764    1/s
product catalytic rate constant                    RPE_R01529    R01529    182.45258    1/s
product catalytic rate constant                    TXT_R01641    R01641    NaN    1/s
product catalytic rate constant                    TAL_R08575    R08575    NaN    1/s
product catalytic rate constant                    TXT_R01067    R01067    NaN    1/s
product catalytic rate constant                    FBP_R00762    R00762    23.4    1/s
product catalytic rate constant                    CSN_R00351    R00351    119.32901    1/s
product catalytic rate constant                    ACN_R01325    R01325    NaN    1/s
product catalytic rate constant                    ACN_R01900    R01900    NaN    1/s
product catalytic rate constant                    ICD_R00709    R00709    30    1/s
product catalytic rate constant                    KGD_R08549    R08549    NaN    1/s
product catalytic rate constant                    SCS_R00405    R00405    45.344239    1/s
product catalytic rate constant                    SDH_R02164    R02164    79.556898    1/s
product catalytic rate constant                    FUM_R01082    R01082    115.24806    1/s
product catalytic rate constant                    MDH_R00342    R00342    227.92729    1/s
product catalytic rate constant                    PPC_R00345    R00345    NaN    1/s
molecular mass    _S__Malate    C00149                    134    Da
molecular mass    Acetyl_CoA    C00024                    810    Da
molecular mass    Fumarate    C00122                    116    Da
molecular mass    cis_Aconitate    C00417                    174    Da
molecular mass    _6_Phospho_D_gluconate    C00345                    276    Da
molecular mass    Orthophosphate    C00009                    98    Da
molecular mass    Pyruvate    C00022                    88    Da
molecular mass    NADPplus    C00006                    744    Da
molecular mass    NADPH    C00005                    745    Da
molecular mass    NADH    C00004                    665    Da
molecular mass    NADplus    C00003                    664    Da
molecular mass    ATP    C00002                    507    Da
molecular mass    H2O    C00001                    NaN    Da
molecular mass    _2_Oxoglutarate    C00026                    146    Da
molecular mass    Oxaloacetate    C00036                    132    Da
molecular mass    Ubiquinone    C00399                    318    Da
molecular mass    D_Erythrose_4_phosphate    C00279                    200    Da
molecular mass    Ubiquinol    C00390                    320    Da
molecular mass    ADP    C00008                    427    Da
molecular mass    Isocitrate    C00311                    192    Da
molecular mass    D_Ribulose_5_phosphate    C00199                    230    Da
molecular mass    D_Xylulose_5_phosphate    C00231                    230    Da
molecular mass    D_Glucose_6_phosphate    C00092                    260    Da
molecular mass    _3_Phospho_D_glyceroyl_phosphate    C00236                    266    Da
molecular mass    CoA    C00010                    768    Da
molecular mass    CO2    C00011                    44    Da
molecular mass    D_Ribose_5_phosphate    C00117                    230    Da
molecular mass    Glycerone_phosphate    C00111                    170    Da
molecular mass    D_Glucose    C00031                    180    Da
molecular mass    D_Fructose_1_6_bisphosphate    C00354                    340    Da
molecular mass    D_Glyceraldehyde_3_phosphate    C00118                    170    Da
molecular mass    Phosphoenolpyruvate    C00074                    168    Da
molecular mass    Citrate    C00158                    192    Da
molecular mass    Succinyl_CoA    C00091                    868    Da
molecular mass    _3_Phospho_D_glycerate    C00197                    186    Da
molecular mass    D_Glucono_1_5_lactone_6_phosphate    C01236                    258    Da
molecular mass    D_Fructose_6_phosphate    C00085                    260    Da
molecular mass    _2_Phospho_D_glycerate    C00631                    186    Da
molecular mass    Succinate    C00042                    118    Da
molecular mass    Sedoheptulose_7_phosphate    C05382                    290    Da
protein molecular mass                    PTS_RPTSsy    RPTSsy    255848    Da
protein molecular mass                    PGI_R02740    R02740    61530    Da
protein molecular mass                    PFK_R04779    R04779    139360    Da
protein molecular mass                    ALD_R01070    R01070    39147    Da
protein molecular mass                    TIM_R01015    R01015    53940    Da
protein molecular mass                    GAP_R01061    R01061    35530    Da
protein molecular mass                    PGK_R01512    R01512    41120    Da
protein molecular mass                    PGM_R01518    R01518    28556    Da
protein molecular mass                    PGH_R00658    R00658    45650    Da
protein molecular mass                    PYK_R00200    R00200    50000    Da
protein molecular mass                    PDH_R00209    R00209    282880    Da
protein molecular mass                    ZWF_R00835    R00835    55700    Da
protein molecular mass                    GLH_R02035    R02035    36310    Da
protein molecular mass                    PGD_R01528    R01528    102960    Da
protein molecular mass                    RPI_R01056    R01056    19466    Da
protein molecular mass                    RPE_R01529    R01529    24554    Da
protein molecular mass                    TXT_R01641    R01641    73043    Da
protein molecular mass                    TAL_R08575    R08575    35219    Da
protein molecular mass                    TXT_R01067    R01067    73043    Da
protein molecular mass                    FBP_R00762    R00762    36834    Da
protein molecular mass                    CSN_R00351    R00351    96020    Da
protein molecular mass                    ACN_R01325    R01325    95588    Da
protein molecular mass                    ACN_R01900    R01900    95588    Da
protein molecular mass                    ICD_R00709    R00709    45760    Da
protein molecular mass                    KGD_R08549    R08549    1209180    Da
protein molecular mass                    SCS_R00405    R00405    71170    Da
protein molecular mass                    SDH_R02164    R02164    792299    Da
protein molecular mass                    FUM_R01082    R01082    60000    Da
protein molecular mass                    MDH_R00342    R00342    32337    Da
protein molecular mass                    PPC_R00345    R00345    198120    Da
flux                    PTS_RPTSsy    RPTSsy    0.5691    mM/s
flux                    PGI_R02740    R02740    0.385    mM/s
flux                    PFK_R04779    R04779    0.4417    mM/s
flux                    ALD_R01070    R01070    0.44702    mM/s
flux                    TIM_R01015    R01015    0.4445    mM/s
flux                    GAP_R01061    R01061    0.9163    mM/s
flux                    PGK_R01512    R01512    0.8946    mM/s
flux                    PGM_R01518    R01518    0.8729    mM/s
flux                    PGH_R00658    R00658    0.91875    mM/s
flux                    PYK_R00200    R00200    0.1841    mM/s
flux                    PDH_R00209    R00209    0.3787    mM/s
flux                    ZWF_R00835    R00835    0.1813    mM/s
flux                    GLH_R02035    R02035    0.1568    mM/s
flux                    PGD_R01528    R01528    0.1323    mM/s
flux                    RPI_R01056    R01056    0.049933333    mM/s
flux                    RPE_R01529    R01529    0.077233333    mM/s
flux                    TXT_R01641    R01641    0.0448    mM/s
flux                    TAL_R08575    R08575    0.0448    mM/s
flux                    TXT_R01067    R01067    0.0273    mM/s
flux                    FBP_R00762    R00762    0    mM/s
flux                    CSN_R00351    R00351    0.154    mM/s
flux                    ACN_R01325    R01325    0.154    mM/s
flux                    ACN_R01900    R01900    0.154    mM/s
flux                    ICD_R00709    R00709    0.154    mM/s
flux                    KGD_R08549    R08549    0.0924    mM/s
flux                    SCS_R00405    R00405    0.1673    mM/s
flux                    SDH_R02164    R02164    0.0924    mM/s
flux                    FUM_R01082    R01082    0.0924    mM/s
flux                    MDH_R00342    R00342    0.0602    mM/s
flux                    PPC_R00345    R00345    -0.2114    mM/s
concentration    _S__Malate    C00149    0.001    10                mM
concentration    Acetyl_CoA    C00024    0.001    10                mM
concentration    Fumarate    C00122    0.001    10                mM
concentration    cis_Aconitate    C00417    0.001    10                mM
concentration    _6_Phospho_D_gluconate    C00345    0.001    10                mM
concentration    Orthophosphate    C00009    10    10                mM
concentration    Pyruvate    C00022    0.001    10                mM
concentration    NADPplus    C00006    0.1    0.1                mM
concentration    NADPH    C00005    0.11389157    0.11389157                mM
concentration    NADH    C00004    0.02741513    0.02741513                mM
concentration    NADplus    C00003    1    1                mM
concentration    ATP    C00002    3.4491395    3.4491395                mM
concentration    H2O    C00001    1    1                mM
concentration    _2_Oxoglutarate    C00026    0.001    10                mM
concentration    Oxaloacetate    C00036    0.001    10                mM
concentration    Ubiquinone    C00399    0.1    0.1                mM
concentration    D_Erythrose_4_phosphate    C00279    0.001    10                mM
concentration    Ubiquinol    C00390    0.1    0.1                mM
concentration    ADP    C00008    0.60461237    0.60461237                mM
concentration    Isocitrate    C00311    0.001    10                mM
concentration    D_Ribulose_5_phosphate    C00199    0.001    10                mM
concentration    D_Xylulose_5_phosphate    C00231    0.001    10                mM
concentration    D_Glucose_6_phosphate    C00092    0.001    10                mM
concentration    _3_Phospho_D_glyceroyl_phosphate    C00236    0.001    10                mM
concentration    CoA    C00010    1    1                mM
concentration    CO2    C00011    0.01    0.01                mM
concentration    D_Ribose_5_phosphate    C00117    0.001    10                mM
concentration    Glycerone_phosphate    C00111    0.001    10                mM
concentration    D_Glucose    C00031    12    12                mM
concentration    D_Fructose_1_6_bisphosphate    C00354    0.001    10                mM
concentration    D_Glyceraldehyde_3_phosphate    C00118    0.001    10                mM
concentration    Phosphoenolpyruvate    C00074    0.001    10                mM
concentration    Citrate    C00158    0.001    10                mM
concentration    Succinyl_CoA    C00091    0.001    10                mM
concentration    _3_Phospho_D_glycerate    C00197    0.001    10                mM
concentration    D_Glucono_1_5_lactone_6_phosphate    C01236    0.001    10                mM
concentration    D_Fructose_6_phosphate    C00085    0.001    10                mM
concentration    _2_Phospho_D_glycerate    C00631    0.001    10                mM
concentration    Succinate    C00042    0.001    10                mM
concentration    Sedoheptulose_7_phosphate    C05382    0.001    10                mM
enzyme cost weight                    PTS_RPTSsy    RPTSsy    1.2491113    dimensionless
enzyme cost weight                    PGI_R02740    R02740    1.2955694    dimensionless
enzyme cost weight                    PFK_R04779    R04779    0.71548508    dimensionless
enzyme cost weight                    ALD_R01070    R01070    1.0628853    dimensionless
enzyme cost weight                    TIM_R01015    R01015    0.53936283    dimensionless
enzyme cost weight                    GAP_R01061    R01061    0.72266321    dimensionless
enzyme cost weight                    PGK_R01512    R01512    0.82214409    dimensionless
enzyme cost weight                    PGM_R01518    R01518    0.58700924    dimensionless
enzyme cost weight                    PGH_R00658    R00658    0.91068733    dimensionless
enzyme cost weight                    PYK_R00200    R00200    1    dimensionless
enzyme cost weight                    PDH_R00209    R00209    2.0415396    dimensionless
enzyme cost weight                    ZWF_R00835    R00835    1.1355955    dimensionless
enzyme cost weight                    GLH_R02035    R02035    0.73865573    dimensionless
enzyme cost weight                    PGD_R01528    R01528    1.0490587    dimensionless
enzyme cost weight                    RPI_R01056    R01056    0.46277989    dimensionless
enzyme cost weight                    RPE_R01529    R01529    0.50280989    dimensionless
enzyme cost weight                    TXT_R01641    R01641    1.5137767    dimensionless
enzyme cost weight                    TAL_R08575    R08575    0.70310598    dimensionless
enzyme cost weight                    TXT_R01067    R01067    1.5137767    dimensionless
enzyme cost weight                    FBP_R00762    R00762    NaN    dimensionless
enzyme cost weight                    CSN_R00351    R00351    1.0058438    dimensionless
enzyme cost weight                    ACN_R01325    R01325    1.8932241    dimensionless
enzyme cost weight                    ACN_R01900    R01900    1.8932241    dimensionless
enzyme cost weight                    ICD_R00709    R00709    0.94526312    dimensionless
enzyme cost weight                    KGD_R08549    R08549    0.85451871    dimensionless
enzyme cost weight                    SCS_R00405    R00405    0.82884497    dimensionless
enzyme cost weight                    SDH_R02164    R02164    1.2922092    dimensionless
enzyme cost weight                    FUM_R01082    R01082    1.2217818    dimensionless
enzyme cost weight                    MDH_R00342    R00342    0.64118123    dimensionless
enzyme cost weight                    PPC_R00345    R00345    1.9865788    dimensionless